VF-Pred: Predicting virulence factor using sequence alignment percentage and ensemble learning models

Leveraging transformers‐based language models in proteome bioinformatics

(2023) Nguyen Quoc Khanh Le   PROTEOMICS

SCORPION is a stacking-based ensemble learning framework for accurate prediction of phage virion proteins

(2022) Saeed Ahmad et al.   Scientific Reports

SAPPHIRE: A stacking-based ensemble learning framework for accurate prediction of thermophilic proteins

(2022) Phasit Charoenkwan et al.   COMPUTERS IN BIOLOGY AND MEDICINE

StackDPPIV: A novel computational approach for accurate prediction of dipeptidyl peptidase IV (DPP-IV) inhibitory peptides

(2021) Phasit Charoenkwan et al.   METHODS

DeepVF: a deep learning-based hybrid framework for identifying virulence factors using the stacking strategy

(2020) Ruopeng Xie et al.   BRIEFINGS IN BIOINFORMATICS

SARS‐CoV‐2 specific virulence factors in COVID‐19

(2020) Ashutosh Kumar et al.   JOURNAL OF MEDICAL VIROLOGY

Light Modulates Important Pathogenic Determinants and Virulence in Acinetobacter baumannii, Pseudomonas aeruginosa and Staphylococcus aureus ESKAPE Pathogens

(2020) M. R. Tuttobene et al.   JOURNAL OF BACTERIOLOGY

iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences

(2018) Zhen Chen et al.   BIOINFORMATICS

VFDB 2019: a comparative pathogenomic platform with an interactive web interface

(2018) Bo Liu et al.   NUCLEIC ACIDS RESEARCH

Victors: a web-based knowledge base of virulence factors in human and animal pathogens

(2018) Samantha Sayers et al.   NUCLEIC ACIDS RESEARCH

Bacterial Virulence Factors: Secreted for Survival

(2016) Aditya Kumar Sharma et al.   INDIAN JOURNAL OF MICROBIOLOGY

Critical evaluation ofin silicomethods for prediction of coiled-coil domains in proteins

(2015) Chen Li et al.   BRIEFINGS IN BIOINFORMATICS

Harnessing Computational Biology for Exact Linear B-Cell Epitope Prediction: A Novel Amino Acid Composition-Based Feature Descriptor

(2015) Vijayakumar Saravanan et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

MP3: A Software Tool for the Prediction of Pathogenic Proteins in Genomic and Metagenomic Data

(2014) Ankit Gupta et al.   PLoS One

Computationally identifying virulence factors based on KEGG pathways

(2013) Weiren Cui et al.   Molecular BioSystems

Paradigms of pathogenesis: targeting the mobile genetic elements of disease

(2012) Eric C. Keen   Frontiers in Cellular and Infection Microbiology

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

VirulentPred: a SVM based prediction method for virulent proteins in bacterial pathogens

(2008) Aarti Garg et al.   BMC BIOINFORMATICS

PseAAC: A flexible web server for generating various kinds of protein pseudo amino acid composition

(2007) Hong-Bin Shen et al.   ANALYTICAL BIOCHEMISTRY