Computationally identifying virulence factors based on KEGG pathways

Pseudomonas aeruginosa PA1006, Which Plays a Role in Molybdenum Homeostasis, Is Required for Nitrate Utilization, Biofilm Formation, and Virulence

(2013) Melanie J. Filiatrault et al.   PLoS One

Deciphering the effects of gene deletion on yeast longevity using network and machine learning approaches

(2012) Tao Huang et al.   BIOCHIMIE

Prediction of Protein Domain with mRMR Feature Selection and Analysis

(2012) Bi-Qing Li et al.   PLoS One

RSARF: Prediction of Residue Solvent Accessibility from Protein Sequence Using Random Forest Method

(2012) Ganesan Pugalenthi et al.   PROTEIN AND PEPTIDE LETTERS

Genome sequence analyses of two isolates from the recent Escherichia coli outbreak in Germany reveal the emergence of a new pathotype: Entero-Aggregative-Haemorrhagic Escherichia coli (EAHEC)

(2011) Elzbieta Brzuszkiewicz et al.   ARCHIVES OF MICROBIOLOGY

Prediction of protein–protein interaction sites using patch-based residue characterization

(2011) Zhijun Qiu et al.   JOURNAL OF THEORETICAL BIOLOGY

Analysis and Prediction of Translation Rate Based on Sequence and Functional Features of the mRNA

(2011) Tao Huang et al.   PLoS One

Improved Prediction of Protein Ligand-Binding Sites Using Random Forests

(2011) Zhijun Qiu et al.   PROTEIN AND PEPTIDE LETTERS

SySAP: a system-level predictor of deleterious single amino acid polymorphisms

(2011) Tao Huang et al.   Protein & Cell

Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition

(2010) Lei Chen et al.   BMC BIOINFORMATICS

AFP-Pred: A random forest approach for predicting antifreeze proteins from sequence-derived properties

(2010) Krishna Kumar Kandaswamy et al.   JOURNAL OF THEORETICAL BIOLOGY

Analysis of Protein Pathway Networks Using Hybrid Properties

(2010) Lei Chen et al.   MOLECULES

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Analysis and Prediction of the Metabolic Stability of Proteins Based on Their Sequential Features, Subcellular Locations and Interaction Networks

(2010) Tao Huang et al.   PLoS One

Prediction of Deleterious Non-Synonymous SNPs Based on Protein Interaction Network and Hybrid Properties

(2010) Tao Huang et al.   PLoS One

Prediction of Pharmacological and Xenobiotic Responses to Drugs Based on Time Course Gene Expression Profiles

(2009) Tao Huang et al.   PLoS One

VirulentPred: a SVM based prediction method for virulent proteins in bacterial pathogens

(2008) Aarti Garg et al.   BMC BIOINFORMATICS