Identification of molecular biomarkers associated with non-small-cell lung carcinoma (NSCLC) using whole-exome sequencing

Somatic mutation variant analysis in rural, resectable non‐small cell lung carcinoma patients

(2022) Jonathan B. Mitchem et al.   Cancer Genetics

Identification of genetic variations associated with drug resistance in non-small cell lung cancer patients undergoing systemic treatment

(2021) Ruihan Luo et al.   BRIEFINGS IN BIOINFORMATICS

Best practices for variant calling in clinical sequencing

(2020) Daniel C. Koboldt   Genome Medicine

Fbxo6 confers drug‐sensitization to cisplatin via inhibiting the activation of Chk1 in non‐small cell lung cancer

(2019) Lin Cai et al.   FEBS LETTERS

Whole exome sequencing reveals mutations in FAT1 tumor suppressor gene clinically impacting on peripheral T-cell lymphoma not otherwise specified

(2019) Maria Antonella Laginestra et al.   MODERN PATHOLOGY

NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis

(2019) Guangyan Zhou et al.   NUCLEIC ACIDS RESEARCH

P1.14-48 Whole Exome Sequencing (WES) in Non-Small Cell Lung Carcinoma (NSCLC): Identification of Novel Biomarkers

(2019) V. Singh et al.   Journal of Thoracic Oncology

Efficacy and safety of first line treatments for patients with advanced epidermal growth factor receptor mutated, non-small cell lung cancer: systematic review and network meta-analysis

(2019) Yi Zhao et al.   BMJ-British Medical Journal

Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics

(2018) Li Ding et al.   CELL

Estrogen-related receptor alpha triggers the proliferation and migration of human non-small cell lung cancer via interleukin-6

(2018) Jing Zhang et al.   CELL BIOCHEMISTRY AND FUNCTION

Familial Esophageal Squamous Cell Carcinoma with damaging rare/germline mutations in KCNJ12/KCNJ18 and GPRIN2 genes

(2018) Narjes Khalilipour et al.   Cancer Genetics

Targeting posttranslational modifications of RIOK1 inhibits the progression of colorectal and gastric cancers

(2018) Xuehui Hong et al.   eLife

Hornerin promotes tumor progression and is associated with poor prognosis in hepatocellular carcinoma

(2018) Shun-Jun Fu et al.   BMC CANCER

TEKT4 Promotes Papillary Thyroid Cancer Cell Proliferation, Colony Formation, and Metastasis through Activating PI3K/Akt Pathway

(2018) Zhouci Zheng et al.   ENDOCRINE PATHOLOGY

Overexpression of Fbxo6 inactivates spindle checkpoint by interacting with Mad2 and BubR1

(2018) Han-Zhang Xu et al.   CELL CYCLE

COSMIC: the Catalogue Of Somatic Mutations In Cancer

(2018) John G Tate et al.   NUCLEIC ACIDS RESEARCH

CtBP2 overexpression promotes tumor cell proliferation and invasion in gastric cancer and is associated with poor prognosis

(2017) Faxiang Dai et al.   Oncotarget

What hides behind the MASC: clinical response and acquired resistance to entrectinib afterETV6-NTRK3identification in a mammary analogue secretory carcinoma (MASC)

(2016) A. Drilon et al.   ANNALS OF ONCOLOGY

KRAS and NKX2-1 Mutations in Invasive Mucinous Adenocarcinoma of the Lung

(2016) David H. Hwang et al.   Journal of Thoracic Oncology

The ExAC browser: displaying reference data information from over 60 000 exomes

(2016) Konrad J. Karczewski et al.   NUCLEIC ACIDS RESEARCH

F-box protein interactions with the hallmark pathways in cancer

(2016) Suzanne J. Randle et al.   SEMINARS IN CANCER BIOLOGY

Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data

(2015) Konstantin Okonechnikov et al.   BIOINFORMATICS

The Distinctive Mutational Spectra of Polyomavirus-Negative Merkel Cell Carcinoma

(2015) Paul William Harms et al.   CANCER RESEARCH

Function and mechanism of F-box proteins in gastric cancer (Review)

(2015) JIAN GONG et al.   INTERNATIONAL JOURNAL OF ONCOLOGY

Acquired Resistance to the TRK Inhibitor Entrectinib in Colorectal Cancer

(2015) M. Russo et al.   Cancer Discovery

DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes

(2015) J. Pinero et al.   Database-The Journal of Biological Databases and Curation

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

CtBP2 could promote prostate cancer cell proliferation through c-Myc signaling

(2014) Changwen Zhang et al.   GENE

Pharmacogenetics of pemetrexed combination therapy in lung cancer: pathway analysis reveals novel toxicity associations

(2014) A Corrigan et al.   PHARMACOGENOMICS JOURNAL

Enriched variations in TEKT4 and breast cancer resistance to paclitaxel

(2014) Yi-Zhou Jiang et al.   Nature Communications

Mutation incidence and coincidence in non small-cell lung cancer: meta-analyses by ethnicity and histology (mutMap)

(2013) S. Dearden et al.   ANNALS OF ONCOLOGY

Clinical significance of E-cadherin, β-catenin, vimentin and S100A4 expression in completely resected squamous cell lung carcinoma

(2013) Hua Zhang et al.   JOURNAL OF CLINICAL PATHOLOGY

Mutational landscape and significance across 12 major cancer types

(2013) Cyriac Kandoth et al.   NATURE

Oncogenic and drug-sensitive NTRK1 rearrangements in lung cancer

(2013) Aria Vaishnavi et al.   NATURE MEDICINE

ClinVar: public archive of relationships among sequence variation and human phenotype

(2013) Melissa J. Landrum et al.   NUCLEIC ACIDS RESEARCH

Pharmacogenomics Knowledge for Personalized Medicine

(2012) M Whirl-Carrillo et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

An integrated map of genetic variation from 1,092 human genomes

(2012)   NATURE

Integrative genome analyses identify key somatic driver mutations of small-cell lung cancer

(2012) Martin Peifer et al.   NATURE GENETICS

Exome sequencing identifies GRIN2A as frequently mutated in melanoma

(2011) Xiaomu Wei et al.   NATURE GENETICS

The allele distribution in next-generation sequencing data sets is accurately described as the result of a stochastic branching process

(2011) Verena Heinrich et al.   NUCLEIC ACIDS RESEARCH

Therapeutic targeting of C-terminal binding protein in human cancer

(2010) Michael W. Straza et al.   CELL CYCLE

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

International network of cancer genome projects

(2010) Thomas J. Hudson (Chairperson) et al.   NATURE

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Kaempferol Inhibits Angiogenesis and VEGF Expression Through Both HIF Dependent and Independent Pathways in Human Ovarian Cancer Cells

(2009) Haitao Luo et al.   NUTRITION AND CANCER-AN INTERNATIONAL JOURNAL

Phase III Study Comparing Cisplatin Plus Gemcitabine With Cisplatin Plus Pemetrexed in Chemotherapy-Naive Patients With Advanced-Stage Non–Small-Cell Lung Cancer

(2008) Giorgio Vittorio Scagliotti et al.   JOURNAL OF CLINICAL ONCOLOGY

The tektin family of microtubule-stabilizing proteins

(2008) Linda A Amos   GENOME BIOLOGY