Holo-omics analysis reveals the influence of gut microbiota on obesity indicators in Jinhua pigs

Estimation of Complex-Trait Prediction Accuracy from the Different Holo-Omics Interaction Models

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Holo-omics for deciphering plant-microbiome interactions

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Prevotella copri increases fat accumulation in pigs fed with formula diets

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US nativity and dietary acculturation impact the gut microbiome in a diverse US population

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PICRUSt2 for prediction of metagenome functions

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Holo-Omics: Integrated Host-Microbiota Multi-omics for Basic and Applied Biological Research

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Dietary Strategies for Metabolic Syndrome: A Comprehensive Review

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Screening of Microbes Associated With Swine Growth and Fat Deposition Traits Across the Intestinal Tract

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Beneficial Effects of Adiponectin on Glucose and Lipid Metabolism and Atherosclerotic Progression: Mechanisms and Perspectives

(2019) Hidekatsu Yanai et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The gut microbiota regulates white adipose tissue inflammation and obesity via a family of microRNAs

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Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Microbial Metabolic Capacity for Intestinal Folate Production and Modulation of Host Folate Receptors

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Functional Classification and Experimental Dissection of Long Noncoding RNAs

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Animal models of obesity and diabetes mellitus

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Applied Hologenomics: Feasibility and Potential in Aquaculture

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Comparative biogeography of the gut microbiome between Jinhua and Landrace pigs

(2018) Yingping Xiao et al.   Scientific Reports

Microbially Produced Imidazole Propionate Impairs Insulin Signaling through mTORC1

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Interactions between the microbiota, immune and nervous systems in health and disease

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Database resources of the National Center for Biotechnology Information

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DADA2: High-resolution sample inference from Illumina amplicon data

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Interactions between Gut Microbiota, Host Genetics and Diet Modulate the Predisposition to Obesity and Metabolic Syndrome

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StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

KEGG as a reference resource for gene and protein annotation

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CIRI: an efficient and unbiased algorithm for de novo circular RNA identification

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POWERLIB:SAS/IMLSoftware for Computing Power in Multivariate Linear Models

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Circular RNAs are a large class of animal RNAs with regulatory potency

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The gut microbiota and obesity: from correlation to causality

(2013) Liping Zhao   NATURE REVIEWS MICROBIOLOGY

Use of pigs as a potential model for research into dietary modulation of the human gut microbiota

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UCHIME improves sensitivity and speed of chimera detection

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Metagenomic biomarker discovery and explanation

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Prodigal: prokaryotic gene recognition and translation initiation site identification

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The core gut microbiome, energy balance and obesity

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A core gut microbiome in obese and lean twins

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The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

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