Uncovering the history of recombination and population structure in western Canadian stripe rust populations through mating type alleles

The changing virulence of stripe rust in Canada from 1984 to 2017

(2021) Kaveh Ghanbarnia et al.   PHYTOPATHOLOGY

High frequency of fungicide resistance‐associated mutations in the wheat yellow rust pathogen Puccinia striiformis f. sp. tritici

(2021) Nicola M Cook et al.   PEST MANAGEMENT SCIENCE

Incursions of divergent genotypes, evolution of virulence and host jumps shape a continental clonal population of the stripe rust pathogen Puccinia striiformis

(2021) Yi Ding et al.   MOLECULAR ECOLOGY

Pathogenomic analyses of Puccinia striiformis f. sp. tritici supports a close genetic relationship between South and East Africa

(2021) Hester J. Schalkwyk et al.   PLANT PATHOLOGY

Distinct Life Histories Impact Dikaryotic Genome Evolution in the Rust Fungus Puccinia striiformis Causing Stripe Rust in Wheat

(2020) Benjamin Schwessinger et al.   Genome Biology and Evolution

Creating novel specificities in a fungal nonself recognition system by single step homologous recombination events

(2020) Jörg Kämper et al.   NEW PHYTOLOGIST

MARPLE, a point-of-care, strain-level disease diagnostics and surveillance tool for complex fungal pathogens

(2019) Guru V. Radhakrishnan et al.   BMC BIOLOGY

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Virulence dynamics and breeding for resistance to stripe, stem, and leaf rust in Canada since 2000

(2019) Gurcharn Singh Brar et al.   PLANT DISEASE

First Report of Puccinia striiformis f. sp. tritici, Causing Stripe Rust of Wheat, in Zimbabwe

(2019) Willem H.P. Boshoff et al.   PLANT DISEASE

Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation

(2019) Feng Li et al.   Nature Communications

Genome re-sequencing and simple sequence repeat markers reveal the existence of divergent lineages in the Canadian Puccinia striiformis f. sp. tritici population with extensive DNA methylation

(2018) Gurcharn S. Brar et al.   ENVIRONMENTAL MICROBIOLOGY

A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity

(2018) Benjamin Schwessinger et al.   mBio

Genomic insights into host adaptation between the wheat stripe rust pathogen (Puccinia striiformis f. sp. tritici) and the barley stripe rust pathogen (Puccinia striiformis f. sp. hordei)

(2018) Chongjing Xia et al.   BMC GENOMICS

Identification of Berberis species Collected from the Himalayan Region of Pakistan Susceptible to Puccinia striiformis f. sp. tritici

(2018) Sajid Mehmood et al.   PLANT DISEASE

Pathogenomic Analysis of Wheat Yellow Rust Lineages Detects Seasonal Variation and Host Specificity

(2017) Vanessa Bueno-Sancho et al.   Genome Biology and Evolution

Puccinia coronata f. sp. avenae : a threat to global oat production

(2017) Eric S. Nazareno et al.   MOLECULAR PLANT PATHOLOGY

Yellow Rust Epidemics Worldwide Were Caused by Pathogen Races from Divergent Genetic Lineages

(2017) Sajid Ali et al.   Frontiers in Plant Science

Dissection of genomic features and variations of three pathotypes of Puccinia striiformis through whole genome sequencing

(2017) Kanti Kiran et al.   Scientific Reports

ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data

(2016) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Race Characterization of Puccinia striiformis f. sp. tritici, the Cause of Wheat Stripe Rust, in Saskatchewan and Southern Alberta, Canada and Virulence Comparison with Races from the United States

(2016) G. S. Brar et al.   PLANT DISEASE

Virulence Variations of Puccinia striiformis f. sp. tritici Isolates Collected from Berberis spp. in China

(2016) Zhiyan Wang et al.   PLANT DISEASE

Virulence and Molecular Diversity of the Puccinia striiformis f. sp. tritici Population in Xinjiang in Relation to Other Regions of Western China

(2016) Gangming Zhan et al.   PLANT DISEASE

Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci

(2016) Christina A. Cuomo et al.   G3-Genes Genomes Genetics

Field pathogenomics reveals the emergence of a diverse wheat yellow rust population

(2015) Amelia Hubbard et al.   GENOME BIOLOGY

From two to many: Multiple mating types in Basidiomycetes

(2015) Ursula Kües   Fungal Biology Reviews

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Population Diversity of Puccinia graminis is Sustained Through Sexual Cycle on Alternate Hosts

(2014) Yue Jin et al.   Journal of Integrative Agriculture

Origin, Migration Routes and Worldwide Population Genetic Structure of the Wheat Yellow Rust Pathogen Puccinia striiformis f.sp. tritici

(2014) Sajid Ali et al.   PLoS Pathogens

Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors

(2013) Dario Cantu et al.   BMC GENOMICS

Virulence phenotypes ofPuccinia striiformisin Alberta from 2009–2011

(2013) Michael D. Holtz et al.   CANADIAN JOURNAL OF PLANT PATHOLOGY

Evolution of uni- and bifactorial sexual compatibility systems in fungi

(2013) B P S Nieuwenhuis et al.   HEREDITY

Identification of Eighteen Berberis Species as Alternate Hosts of Puccinia striiformis f. sp. tritici and Virulence Variation in the Pathogen Isolates from Natural Infection of Barberry Plants in China

(2013) Jie Zhao et al.   PHYTOPATHOLOGY

Genetic diversity ofPuccinia striiformisfrom cereals in Alberta, Canada

(2013) M. D. Holtz et al.   PLANT PATHOLOGY

Virulence ofPuccinia striiformison wheat and barley in central Alberta

(2012) K. Kumar et al.   CANADIAN JOURNAL OF PLANT PATHOLOGY

Sex, outcrossing and mating types: unsolved questions in fungi and beyond

(2012) S. BILLIARD et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Somatic Hybridization in the Uredinales

(2011) Robert F. Park et al.   Annual Review of Phytopathology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Having sex, yes, but with whom? Inferences from fungi on the evolution of anisogamy and mating types

(2010) Sylvain Billiard et al.   BIOLOGICAL REVIEWS

Century-Old Mystery of Puccinia striiformis Life History Solved with the Identification of Berberis as an Alternate Host

(2010) Yue Jin et al.   PHYTOPATHOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Evidence of genetic recombination in wheat yellow rust populations of a Chinese oversummering area

(2009) M. Mboup et al.   FUNGAL GENETICS AND BIOLOGY

TheUstilago maydis bmating type locus controls hyphal proliferation and expression of secreted virulence factorsin planta

(2009) Ramon Wahl et al.   MOLECULAR MICROBIOLOGY