Computational assessment of lipid production in Rhodosporidium toruloides in two‐stage and one‐stage batch bioprocesses

Pareto optimal metabolic engineering for the growth‐coupled overproduction of sustainable chemicals

(2022) Matteo N. Amaradio et al.   BIOTECHNOLOGY AND BIOENGINEERING

Systems‐level approaches for understanding and engineering of the oleaginous cell factory Yarrowia lipolytica

(2021) Naghmeh Poorinmohammad et al.   BIOTECHNOLOGY AND BIOENGINEERING

Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0

(2019) Laurent Heirendt et al.   Nature Protocols

Comprehensive analysis of a metabolic model for lipid production in Rhodosporidium toruloides

(2018) María Teresita Castañeda et al.   JOURNAL OF BIOTECHNOLOGY

Expression of phosphotransacetylase in Rhodosporidium toruloides leading to improved cell growth and lipid production

(2018) Xiaobing Yang et al.   RSC Advances

Comparative analysis of biodiesel produced by acidic transesterification of lipid extracted from oleaginous yeast Rhodosporidium toruloides

(2018) Gunjan Singh et al.   3 Biotech

When Do Two-Stage Processes Outperform One-Stage Processes?

(2017) Steffen Klamt et al.   Biotechnology Journal

Optimization of cultivation conditions for biotechnological production of lipid by Rhodotorula kratochvilovae (syn, Rhodosporidium kratochvilovae) SY89 for biodiesel preparation

(2017) Tamene Milkessa Jiru et al.   3 Biotech

Optimization of cultivation conditions for biotechnological production of lipid by Rhodotorula kratochvilovae (syn, Rhodosporidium kratochvilovae) SY89 for biodiesel preparation

(2017) Tamene Milkessa Jiru et al.   3 Biotech

Metabolic engineering of the oleaginous yeast Rhodosporidium toruloides IFO0880 for lipid overproduction during high-density fermentation

(2016) Shuyan Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Application of theoretical methods to increase succinate production in engineered strains

(2016) M. A. Valderrama-Gomez et al.   BIOPROCESS AND BIOSYSTEMS ENGINEERING

Enhanced lipid production by Rhodosporidium toruloides using different fed-batch feeding strategies with lignocellulosic hydrolysate as the sole carbon source

(2016) Qiang Fei et al.   Biotechnology for Biofuels

Rhodosporidium toruloidescultivated in NaCl-enriched glucose-based media: Adaptation dynamics and lipid production

(2016) Sidoine Sadjeu Tchakouteu et al.   ENGINEERING IN LIFE SCIENCES

Bioconversion of glycerol into lipids byRhodosporidium toruloidesin a two-stage process and characterization of lipid properties

(2016) Jingyang Xu et al.   ENGINEERING IN LIFE SCIENCES

EngineeringRhodosporidium toruloidesfor increased lipid production

(2015) Shuyan Zhang et al.   BIOTECHNOLOGY AND BIOENGINEERING

Microbial lipid-based lignocellulosic biorefinery: feasibility and challenges

(2015) Mingjie Jin et al.   TRENDS IN BIOTECHNOLOGY

Recycling biodiesel-derived glycerol by the oleaginous yeast Rhodosporidium toruloides Y4 through the two-stage lipid production process

(2014) Xiaobing Yang et al.   BIOCHEMICAL ENGINEERING JOURNAL

Microbial biodiesel production by direct methanolysis of oleaginous biomass

(2014) Panagiotis Thliveros et al.   BIORESOURCE TECHNOLOGY

Modeling pure culture heterotrophic production of polyhydroxybutyrate (PHB)

(2014) Md. Salatul Islam Mozumder et al.   BIORESOURCE TECHNOLOGY

DFBAlab: a fast and reliable MATLAB code for dynamic flux balance analysis

(2014) Jose A Gomez et al.   BMC BIOINFORMATICS

Functional integration of multiple genes into the genome of the oleaginous yeastRhodosporidium toruloides

(2014) Xinping Lin et al.   FEMS YEAST RESEARCH

ORCA: a COBRA toolbox extension for model-driven discovery and analysis

(2013) Longfei Mao et al.   BIOINFORMATICS

Enhancement of lipid productivity of Rhodosporidium toruloides in distillery wastewater by increasing cell density

(2013) Jiayin Ling et al.   BIORESOURCE TECHNOLOGY

Kinetics of continuous cultivation of the oleaginous yeast Rhodosporidium toruloides

(2013) Hongwei Shen et al.   JOURNAL OF BIOTECHNOLOGY

The design of long-term effective uranium bioremediation strategy using a community metabolic model

(2012) K. Zhuang et al.   BIOTECHNOLOGY AND BIOENGINEERING

A reliable simulator for dynamic flux balance analysis

(2012) K. Höffner et al.   BIOTECHNOLOGY AND BIOENGINEERING

A multi-omic map of the lipid-producing yeast Rhodosporidium toruloides

(2012) Zhiwei Zhu et al.   Nature Communications

Modeling lipid accumulation in oleaginous fungi in chemostat cultures. II: Validation of the chemostat model using yeast culture data from literature

(2011) Petra Meeuwse et al.   BIOPROCESS AND BIOSYSTEMS ENGINEERING

Lipids of oleaginous yeasts. Part II: Technology and potential applications

(2011) Seraphim Papanikolaou et al.   EUROPEAN JOURNAL OF LIPID SCIENCE AND TECHNOLOGY

Lipids of oleaginous yeasts. Part I: Biochemistry of single cell oil production

(2011) Seraphim Papanikolaou et al.   EUROPEAN JOURNAL OF LIPID SCIENCE AND TECHNOLOGY

Phosphate-limitation mediated lipid production by Rhodosporidium toruloides

(2010) Siguo Wu et al.   BIORESOURCE TECHNOLOGY

Microbial lipid production by Rhodosporidium toruloides under sulfate-limited conditions

(2010) Siguo Wu et al.   BIORESOURCE TECHNOLOGY

Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments

(2010) Kai Zhuang et al.   ISME Journal

Lipid production by Rhodosporidium toruloides Y4 using different substrate feeding strategies

(2010) Xin Zhao et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY

Dynamic metabolic engineering for increasing bioprocess productivity

(2008) Nikolaos Anesiadis et al.   METABOLIC ENGINEERING