A novel eDNA approach for rare species monitoring: Application of long-read shotgun sequencing to Lynx rufus soil pawprints

Measuring biodiversity from DNA in the air

(2022) Elizabeth L. Clare et al.   CURRENT BIOLOGY

Airborne environmental DNA for terrestrial vertebrate community monitoring

(2022) Christina Lynggaard et al.   CURRENT BIOLOGY

Detection and population genomics of sea turtle species via noninvasive environmental DNA analysis of nesting beach sand tracks and oceanic water

(2022) Jessica A. Farrell et al.   Molecular Ecology Resources

A Reference Genome Assembly of the Bobcat, Lynx rufus

(2022) Meixi Lin et al.   JOURNAL OF HEREDITY

A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA

(2022) Kurt H. Kjær et al.   NATURE

Twelve years of SAMtools and BCFtools

(2021) Petr Danecek et al.   GigaScience

The Promise and Pitfalls of Environmental DNA and RNA Approaches for the Monitoring of Human and Animal Pathogens from Aquatic Sources

(2021) Jessica A Farrell et al.   BIOSCIENCE

Further occurrences of melanism in a northern, peripheral, population of Bobcat (Lynx rufus)

(2021) Donald McAlpine   The Canadian Field-Naturalist

IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring

(2020) Katrina L Kalantar et al.   GigaScience

The sound of a tropical forest

(2019) Zuzana Burivalova et al.   SCIENCE

Beyond Biodiversity: Can Environmental DNA (eDNA) Cut It as a Population Genetics Tool?

(2019) Clare I.M. Adams et al.   Genes

It’s a trap: Optimizing detection of rare small mammals

(2019) Kristina M. Harkins et al.   PLoS One

Sensitivity of biodiversity indices to life history stage, habitat type and landscape in Odonata community

(2019) Rassim Khelifa   BIOLOGICAL CONSERVATION

Entirely Off-Grid and Solar-Powered DNA Sequencing of Microbial Communities during an Ice Cap Traverse Expedition

(2019) Glen-Oliver. F. Gowers et al.   Genes

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

OUP accepted manuscript

(2018)   BIOINFORMATICS

Animal Sound Identifier (ASI): software for automated identification of vocal animals

(2018) Otso Ovaskainen et al.   ECOLOGY LETTERS

Repurposing environmental DNA samples-detecting the western pearlshell (Margaritifera falcata ) as a proof of concept

(2018) Joseph C. Dysthe et al.   Ecology and Evolution

Using environmental DNA methods to improve winter surveys for rare carnivores: DNA from snow and improved noninvasive techniques

(2018) Thomas W. Franklin et al.   BIOLOGICAL CONSERVATION

Optimising sampling methods for small mammal communities in Neotropical rainforests

(2017) Ricardo S. Bovendorp et al.   MAMMAL REVIEW

An integrated framework to identify wildlife populations under threat from climate change

(2017) Orly Razgour et al.   Molecular Ecology Resources

Scaling-up camera traps: monitoring the planet's biodiversity with networks of remote sensors

(2016) Robin Steenweg et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Centrifuge: rapid and sensitive classification of metagenomic sequences

(2016) Daehwan Kim et al.   GENOME RESEARCH

Detection limits of quantitative and digital PCR assays and their influence in presence-absence surveys of environmental DNA

(2016) Margaret E. Hunter et al.   Molecular Ecology Resources

High-throughput biodiversity analysis: Rapid assessment of species richness and ecological interactions of Chrysomelidae (Coleoptera) in the tropics

(2016) Jesus Gomez-Zurita et al.   ZooKeys

Monitoring the near-extinct European weather loach in Denmark based on environmental DNA from water samples

(2015) Eva Egelyng Sigsgaard et al.   BIOLOGICAL CONSERVATION

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

Use of Droplet Digital PCR for Estimation of Fish Abundance and Biomass in Environmental DNA Surveys

(2015) Hideyuki Doi et al.   PLoS One

DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match

(2014) B. E. Deagle et al.   Biology Letters

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Quantifying Environmental DNA Signals for Aquatic Invasive Species Across Multiple Detection Platforms

(2014) Lucas M. Nathan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Identifying potential conservation areas in the Cuitzeo Lake basin, Mexico by multitemporal analysis of landscape connectivity

(2014) Camilo A. Correa Ayram et al.   JOURNAL FOR NATURE CONSERVATION

How long is enough to detect terrestrial animals? Estimating the minimum trapping effort on camera traps

(2014) Xingfeng Si et al.   PeerJ

Robust Detection of Rare Species Using Environmental DNA: The Importance of Primer Specificity

(2013) Taylor M. Wilcox et al.   PLoS One

Real-time bioacoustics monitoring and automated species identification

(2013) T. Mitchell Aide et al.   PeerJ

Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Estimation of Fish Biomass Using Environmental DNA

(2012) Teruhiko Takahara et al.   PLoS One

“Sight-unseen” detection of rare aquatic species using environmental DNA

(2011) Christopher L. Jerde et al.   Conservation Letters

Global Biodiversity: Indicators of Recent Declines

(2010) S. H. M. Butchart et al.   SCIENCE

Scenarios for Global Biodiversity in the 21st Century

(2010) H. M. Pereira et al.   SCIENCE

Camera trapping photographic rate as an index of density in forest ungulates

(2009) Francesco Rovero et al.   JOURNAL OF APPLIED ECOLOGY

Considerations on the Use of Remote Cameras to Detect Canada Lynx in Northern Maine

(2009) Clayton K. Nielsen et al.   NORTHEASTERN NATURALIST