Constructing phylogenetic networks via cherry picking and machine learning
Published 2023 View Full Article
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Title
Constructing phylogenetic networks via cherry picking and machine learning
Authors
Keywords
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Journal
Algorithms for Molecular Biology
Volume 18, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2023-09-16
DOI
10.1186/s13015-023-00233-3
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- (2021) Charles Semple et al. JOURNAL OF MATHEMATICAL BIOLOGY
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- (2021) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
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