By reconstructing a multifunctional intensive microbiome, effective microorganisms (EM) improve the ecological environment of rice–crayfish cocropping

Ecosystem consequences of introducing plant growth promoting rhizobacteria to managed systems and potential legacy effects

(2022) Jessica A. M. Moore et al.   NEW PHYTOLOGIST

Phylum Gemmatimonadota and Its Role in the Environment

(2022) Izabela Mujakić et al.   Microorganisms

Core phylotypes enhance the resistance of soil microbiome to environmental changes to maintain multifunctionality in agricultural ecosystems

(2022) Shuo Jiao et al.   GLOBAL CHANGE BIOLOGY

Determining the primary sources of groundwater bacterial communities in a large-scale plain area: Microbial source tracking and interpretation for different land use patterns

(2022) Lei Ji et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Agricultural intensification weakens the soil health index and stability of microbial networks

(2022) Rui Xue et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Destruction of the soil microbial ecological environment caused by the over-utilization of the rice-crayfish co-cropping pattern

(2021) Yang Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Crayfish–rice integrated system of production: an agriculture success story in China. A review

(2021) Yang Jiang et al.   Agronomy for Sustainable Development

Responses of soil bacterial community structure and function to dry–wet cycles more stable in paddy than in dryland agricultural ecosystems

(2021) Jiejun Qi et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Rice-crayfish coculture delivers more nutrition at a lower environmental cost

(2021) Qiang Xu et al.   Sustainable Production and Consumption

Environmental applications of Effective Microorganisms: a review of current knowledge and recommendations for future directions

(2021) Safwat M. Safwat et al.   Journal of Engineering and Applied Science

Responses of dietary supplementation of probiotic effective microorganisms (EMs) in Oreochromis niloticus on growth, hematological, intestinal histopathological, and antiparasitic activities

(2020) Mohamed Abdel-Aziz et al.   AQUACULTURE INTERNATIONAL

Microbial carbon use efficiency, biomass turnover, and necromass accumulation in paddy soil depending on fertilization

(2020) Xiangbi Chen et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Tracing the accumulation of in vivo human oral microbiota elucidates microbial community dynamics at the gateway to the GI tract

(2019) Jinfeng Wang et al.   GUT

Steering soil microbiome to enhance soil system resilience

(2019) Likun Wang et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Tracking microbial evolution in the human gut using Hi-C reveals extensive horizontal gene transfer, persistence and adaptation

(2019) Eitan Yaffe et al.   Nature Microbiology

The impact of failure: unsuccessful bacterial invasions steer the soil microbial community away from the invader’s niche

(2018) C. A. Mallon et al.   ISME Journal

Fungal Biodiversity and Their Role in Soil Health

(2018) Magdalena Frąc et al.   Frontiers in Microbiology

Rugosibacter aromaticivorans gen. nov., sp. nov., a bacterium within the family Rhodocyclaceae, isolated from contaminated soil, capable of degrading aromatic compounds

(2017)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Source tracking using microbial community fingerprints: Method comparison with hydrodynamic modelling

(2017) D.T. McCarthy et al.   WATER RESEARCH

Seed Pelleting with Calcium Peroxide Improves Crop Establishment of Direct-seeded Rice under Waterlogging Conditions

(2017) Junhao Mei et al.   Scientific Reports

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Crop rotations alter bacterial and fungal diversity in paddy soils across East Asia

(2016) Yuji Jiang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Bacterial communities in oil contaminated soils: Biogeography and co-occurrence patterns

(2016) Shuo Jiao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effective microorganisms and their influence on vegetable production – a review

(2016) M. Olle et al.   JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY

Resource pulses can alleviate the biodiversity–invasion relationship in soil microbial communities

(2015) Cyrus A. Mallon et al.   ECOLOGY

The neutral metallopeptidase NMP1 of Trichoderma guizhouense is required for mycotrophy and self-defence

(2015) Jian Zhang et al.   ENVIRONMENTAL MICROBIOLOGY

An improved effective microorganism (EM) soil ball-making method for water quality restoration

(2015) Gun-Seok Park et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

High Oxygen Concentration Increases the Abundance and Activity of Bacterial Rather than Archaeal Nitrifiers in Rice Field Soil

(2015) Xiubin Ke et al.   MICROBIAL ECOLOGY

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Induced Systemic Resistance by Beneficial Microbes

(2014) Corné M.J. Pieterse et al.   Annual Review of Phytopathology

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Soil food web properties explain ecosystem services across European land use systems

(2013) F. T. de Vries et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Manipulating the soil microbiome to increase soil health and plant fertility

(2012) Jacqueline M. Chaparro et al.   BIOLOGY AND FERTILITY OF SOILS

Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi

(2012) Dimitry Y Sorokin et al.   ISME Journal

Microbial diversity determines the invasion of soil by a bacterial pathogen

(2012) J. D. van Elsas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Terrestrial Ecosystem Responses to Species Gains and Losses

(2011) D. A. Wardle et al.   SCIENCE

Soil biota community structure and abundance under agricultural intensification and extensification

(2010) Maria B. Postma-Blaauw et al.   ECOLOGY

Microorganisms and climate change: terrestrial feedbacks and mitigation options

(2010) Brajesh K. Singh et al.   NATURE REVIEWS MICROBIOLOGY

Role and functions of beneficial microorganisms in sustainable aquaculture

(2009) Qunlan Zhou et al.   BIORESOURCE TECHNOLOGY

Lactic acid bacteria – Potential for control of mould growth and mycotoxins: A review

(2009) D.K.D. Dalié et al.   FOOD CONTROL