Outlier SNPs enable food traceability of the southern rock lobster, Jasus edwardsii

Adaptive genetic variation distinguishes Chilean blue mussels (Mytilus chilensis) from different marine environments

(2016) Cristián Araneda et al.   Ecology and Evolution

Pelagic Larval Duration and Dispersal Distance Revisited

(2016) Alan L. Shanks   BIOLOGICAL BULLETIN

On-shelf larval retention limits population connectivity in a coastal broadcast spawner

(2015) PR Teske et al.   MARINE ECOLOGY PROGRESS SERIES

Seascape genetics along environmental gradients in the Arabian Peninsula: insights from ddRAD sequencing of anemonefishes

(2015) Pablo Saenz-Agudelo et al.   MOLECULAR ECOLOGY

RAD genotyping reveals fine-scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the American lobster (Homarus americanus)

(2015) Laura Benestan et al.   MOLECULAR ECOLOGY

Population differentiation determined from putative neutral and divergent adaptive genetic markers in Eulachon (Thaleichthys pacificus, Osmeridae), an anadromous Pacific smelt

(2015) John R. Candy et al.   Molecular Ecology Resources

Exploring seascape genetics and kinship in the reef spongeStylissa carteriin the Red Sea

(2015) Emily C. Giles et al.   Ecology and Evolution

On-shelf larval retention limits population connectivity in a coastal broadcast spawner

(2015) PR Teske et al.   MARINE ECOLOGY PROGRESS SERIES

Traceability of mussel (Mytilus chilensis) in southern Chile using microsatellite molecular markers and assignment algorithms. Exploratory survey

(2014) María Angélica Larraín et al.   FOOD RESEARCH INTERNATIONAL

Genomic footprints of speciation in Atlantic eels (Anguilla anguillaandA. rostrata)

(2014) Magnus W. Jacobsen et al.   MOLECULAR ECOLOGY

Genetic mapping of horizontal stripes in Lake Victoria cichlid fishes: benefits and pitfalls of using RAD markers for dense linkage mapping

(2014) Frederico Henning et al.   MOLECULAR ECOLOGY

Restriction site-associated DNA sequencing, genotyping error estimation andde novoassembly optimization for population genetic inference

(2014) A. Mastretta-Yanes et al.   Molecular Ecology Resources

Population size, habitat fragmentation, and the nature of adaptive variation in a stream fish

(2014) D. J. Fraser et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Unexpected cross-species contamination in genome sequencing projects

(2014) Samier Merchant et al.   PeerJ

Testing the consistency of connectivity patterns for a widely dispersing marine species

(2013) L Thomas et al.   HEREDITY

Population genetic variation in the New Zealand greenshell mussel: locus-dependent conflicting signals of weak structure and high gene flow balanced against pronounced structure and high self-recruitment

(2013) Kaijian Wei et al.   MARINE BIOLOGY

High degree of cryptic population differentiation in the Baltic Sea herringClupea harengus

(2013) Jukka Corander et al.   MOLECULAR ECOLOGY

Outlier SNP markers reveal fine-scale genetic structuring across European hake populations (Merluccius merluccius)

(2013) Ilaria Milano et al.   MOLECULAR ECOLOGY

NeEstimatorv2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data

(2013) C. Do et al.   Molecular Ecology Resources

Investigation of Genetic Structure between Deep and Shallow Populations of the Southern Rock Lobster, Jasus edwardsii in Tasmania, Australia

(2013) Erin M. J. Morgan et al.   PLoS One

Genome sequencing and population genomics in non-model organisms

(2013) Hans Ellegren   TRENDS IN ECOLOGY & EVOLUTION

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data

(2012) Rasmus Nielsen et al.   PLoS One

Gene-associated markers provide tools for tackling illegal fishing and false eco-certification

(2012) Einar E. Nielsen et al.   Nature Communications

Assignment test method using hypervariable markers for blue marlin (Makaira nigricans) stock identification

(2012) Laurie Sorenson et al.   Conservation Genetics Resources

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Sweepstakes Reproductive Success in Highly Fecund Marine Fish and Shellfish: A Review and Commentary

(2011) Dennis Hedgecock et al.   BULLETIN OF MARINE SCIENCE

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Local Adaptation in Marine Invertebrates

(2010) Eric Sanford et al.   Annual Review of Marine Science

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Growth rate of adult rock lobsters Jasus edwardsii increased through translocation

(2010) Arani Chandrapavan et al.   FISHERIES RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Haemolymph condition of deep-water southern rock lobsters (Jasus edwardsii) translocated to inshore reefs

(2010) Arani Chandrapavan et al.   MARINE AND FRESHWATER BEHAVIOUR AND PHYSIOLOGY

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Colour variation in the southern rock lobsterJasus edwardsiiand its economic impact on the commercial industry

(2010) Arani Chandrapavan et al.   NEW ZEALAND JOURNAL OF MARINE AND FRESHWATER RESEARCH

The Good, the Bad and the Recovery in an Assisted Migration

(2010) Bridget S. Green et al.   PLoS One

A scalable, fully automated process for construction of sequence-ready barcoded libraries for 454

(2010) Niall J Lennon et al.   GENOME BIOLOGY

Phenotype–environment mismatches reduce connectivity in the sea

(2009) D. J. Marshall et al.   ECOLOGY LETTERS

Linkage disequilibrium estimates of contemporaryNeusing highly variable genetic markers: a largely untapped resource for applied conservation and evolution

(2009) Robin S. Waples et al.   Evolutionary Applications

Population genomics of marine fishes: identifying adaptive variation in space and time

(2009) EINAR E. NIELSEN et al.   MOLECULAR ECOLOGY

LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method

(2008) Tiago Antao et al.   BMC BIOINFORMATICS

Fisheries forensics: the use of DNA tools for improving compliance, traceability and enforcement in the fishing industry

(2008) Rob Ogden   FISH AND FISHERIES

DNA barcoding detects market substitution in North American seafood

(2008) Eugene H.-K. Wong et al.   FOOD RESEARCH INTERNATIONAL

Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products

(2008) Norihiro Tomita et al.   Nature Protocols

Loop mediated isothermal amplification (LAMP): a new generation of innovative gene amplification technique; perspectives in clinical diagnosis of infectious diseases

(2008) Manmohan Parida et al.   REVIEWS IN MEDICAL VIROLOGY