Description of a Novel Fish Pathogen, Plesiomonas shigelloides subsp. oncorhynchi, Isolated from Rainbow Trout (Oncorhynchus mykiss): First Genome Analysis and Comparative Genomics

Population genetic and evolution analysis of Vibrio isolated from Turkish fish farms

(2022) Muhammed Duman et al.   AQUACULTURE

Pathogenicity of Plesiomonas shigelloides causing mass mortalities of largemouth bass (Micropterus salmoides) and its induced host immune response

(2022) Qieqi Qian et al.   FISH & SHELLFISH IMMUNOLOGY

Identification and pathogenicity of Plesiomonas shigelloides from Acipenser dabryanus in China

(2021) Jin‐zhen Jiang et al.   AQUACULTURE RESEARCH

antiSMASH 6.0: improving cluster detection and comparison capabilities

(2021) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

ARTS 2.0: feature updates and expansion of the Antibiotic Resistant Target Seeker for comparative genome mining

(2020) Mehmet Direnç Mungan et al.   NUCLEIC ACIDS RESEARCH

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

(2019) Edoardo Pasolli et al.   CELL

Identification and pathogenicity of Plesiomonas shigelloides in Silver Carp

(2018) B.K. Behera et al.   AQUACULTURE

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

(2018) Chirag Jain et al.   Nature Communications

Species Distribution and Prevalence of Putative Virulence Factors in Mesophilic Aeromonas spp. Isolated from Fresh Retail Sushi

(2017) Sunniva Hoel et al.   Frontiers in Microbiology

The O-antigen of Plesiomonas shigelloides serotype O36 containing pseudaminic acid

(2016) Marta Kaszowska et al.   CARBOHYDRATE RESEARCH

Plesiomonas shigelloides Revisited

(2016) J. Michael Janda et al.   CLINICAL MICROBIOLOGY REVIEWS

NCBI prokaryotic genome annotation pipeline

(2016) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

IMNGS: A comprehensive open resource of processed 16S rRNA microbial profiles for ecology and diversity studies

(2016) Ilias Lagkouvardos et al.   Scientific Reports

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Quantitative and qualitative analyses of the bacterial microbiota of tilapia (Oreochromis niloticus) cultured in earthen ponds in the Philippines

(2015) Rolando Pakingking et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Diversity of Aquatic Pseudomonas Species and Their Activity against the Fish Pathogenic Oomycete Saprolegnia

(2015) Yiying Liu et al.   PLoS One

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

(2015) Thomas Brettin et al.   Scientific Reports

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

A Proposed Genus Boundary for the Prokaryotes Based on Genomic Insights

(2014) Q.-L. Qin et al.   JOURNAL OF BACTERIOLOGY

Isolation and Distribution of Bacterial Flora in Farmed Rainbow Trout from Mexico

(2011) Celene Salgado-Miranda et al.   JOURNAL OF AQUATIC ANIMAL HEALTH

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Plesiomonas shigelloides- An Aquatic Food Borne Pathogen: A Review of its Characteristics, Pathogenicity, Ecology, and Molecular Detection

(2008) Robert E. Levin   FOOD BIOTECHNOLOGY