Arabidopsis histone H3 lysine 9 methyltransferases KYP/SUVH5/6 are involved in leaf development by interacting with AS1-AS2 to repress KNAT1 and KNAT2

SDC mediates DNA methylation-controlled clock pace by interacting with ZTL in Arabidopsis

(2021) Wenwen Tian et al.   NUCLEIC ACIDS RESEARCH

The histone variant H2A.W and linker histone H1 co-regulate heterochromatin accessibility and DNA methylation

(2021) Pierre Bourguet et al.   Nature Communications

Small RNAs guide histone methylation in Arabidopsis embryos

(2021) Jean-Sébastien Parent et al.   GENES & DEVELOPMENT

Arabidopsis ASYMMETRIC LEAVES2 (AS2): roles in plant morphogenesis, cell division, and pathogenesis

(2021) Yasunori Machida et al.   JOURNAL OF PLANT RESEARCH

Arabidopsis JMJ29 is involved in trichome development by regulating the core trichome initiation gene GLABRA3

(2020) Fu‐Yu Hung et al.   PLANT JOURNAL

Overexpression of ethylene response factor ERF96 gene enhances selenium tolerance in Arabidopsis

(2020) Li Jiang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

The LDL1/2-HDA6 Histone Modification Complex Interacts With TOC1 and Regulates the Core Circadian Clock Components in Arabidopsis

(2019) Fu-Yu Hung et al.   Frontiers in Plant Science

Oscillating Aquaporin Phosphorylation and 14-3-3 Proteins Mediate the Circadian Regulation of Leaf Hydraulics

(2019) Karine Prado et al.   PLANT CELL

Histone H3K9 Methyltransferase G9a in Oocytes Is Essential for Preimplantation Development but Dispensable for CG Methylation Protection

(2019) Wan Kin Au Yeung et al.   Cell Reports

Arabidopsis Histone Methyltransferase SUVH5 Is a Positive Regulator of Light-Mediated Seed Germination

(2019) Dachuan Gu et al.   Frontiers in Plant Science

The Class II KNOX genes KNAT3 and KNAT7 work cooperatively to influence deposition of secondary cell walls that provide mechanical support to Arabidopsis stems

(2019) Shumin Wang et al.   PLANT JOURNAL

The formation of perinucleolar bodies is important for normal leaf development and requires the zinc‐finger DNA‐binding motif in Arabidopsis ASYMMETRIC LEAVES2

(2019) Lilan Luo et al.   PLANT JOURNAL

Histone H2A variants confer specific properties to nucleosomes and impact on chromatin accessibility

(2018) Akihisa Osakabe et al.   NUCLEIC ACIDS RESEARCH

The Chromatin Remodelers PKL and PIE1 Act in an Epigenetic Pathway That Determines H3K27me3 Homeostasis in Arabidopsis

(2018) Benjamin Carter et al.   PLANT CELL

Mre11 complex links sister chromatids to promote repair of a collapsed replication fork

(2018) Min Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

HISTONE DEACETYLASE6 Acts in Concert with Histone Methyltransferases SUVH4, SUVH5, and SUVH6 to Regulate Transposon Silencing

(2017) Chun-Wei Yu et al.   PLANT CELL

JMJ27, an Arabidopsis H3K9 histone demethylase, modulates defense against Pseudomonas syringae and flowering time

(2017) Aditya Dutta et al.   PLANT JOURNAL

Loss of CDKC ;2 increases both cell division and drought tolerance in Arabidopsis thaliana

(2017) Lina Zhao et al.   PLANT JOURNAL

Temporal dynamics of gene expression and histone marks at the Arabidopsis shoot meristem during flowering

(2017) Yuan You et al.   Nature Communications

A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment ofArabidopsis

(2016) Yoko Matsumura et al.   Biology Open

ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization

(2015) Guangchuang Yu et al.   BIOINFORMATICS

DNA methylation pathways and their crosstalk with histone methylation

(2015) Jiamu Du et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity

(2015) Aman Y. Husbands et al.   PLANT CELL

Antagonistic Roles for KNOX1 and KNOX2 Genes in Patterning the Land Plant Body Plan Following an Ancient Gene Duplication

(2015) Chihiro Furumizu et al.   PLoS Genetics

The Small Ethylene Response Factor ERF96 is Involved in the Regulation of the Abscisic Acid Response in Arabidopsis

(2015) Xiaoping Wang et al.   Frontiers in Plant Science

The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis

(2015) Chiyoko Machida et al.   Wiley Interdisciplinary Reviews-Developmental Biology

The Histone Variant H2A.W Defines Heterochromatin and Promotes Chromatin Condensation in Arabidopsis

(2014) Ramesh Yelagandula et al.   CELL

Changes in Histone Methylation and Acetylation during Microspore Reprogramming to Embryogenesis Occur Concomitantly with BnHKMT and BnHAT Expression and Are Associated with Cell Totipotency, Proliferation, and Differentiation in Brassica napus

(2014) Héctor Rodríguez-Sanz et al.   CYTOGENETIC AND GENOME RESEARCH

Mechanism of DNA Methylation-Directed Histone Methylation by KRYPTONITE

(2014) Jiamu Du et al.   MOLECULAR CELL

Transcriptional Repression by Histone Deacetylases in Plants

(2014) Xuncheng Liu et al.   Molecular Plant

SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation

(2014) Lianna M. Johnson et al.   NATURE

Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX Families of Transcription Factors[W]

(2014) S. J. H. Kuijt et al.   PLANT PHYSIOLOGY

The SET Domain Proteins SUVH2 and SUVH9 Are Required for Pol V Occupancy at RNA-Directed DNA Methylation Loci

(2014) Zhang-Wei Liu et al.   PLoS Genetics

The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin

(2013) Assaf Zemach et al.   CELL

Dual regulation of ETTIN (ARF3) gene expression by AS1-AS2, which maintains the DNA methylation level, is involved in stabilization of leaf adaxial-abaxial partitioning in Arabidopsis

(2013) M. Iwasaki et al.   DEVELOPMENT

The ASYMMETRIC LEAVES complex maintains repression of KNOX homeobox genes via direct recruitment of Polycomb-repressive complex2

(2013) M. Lodha et al.   GENES & DEVELOPMENT

The functional interactome landscape of the human histone deacetylase family

(2013) P. Joshi et al.   Molecular Systems Biology

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis

(2013) Hume Stroud et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants

(2012) Jiamu Du et al.   CELL

Tissue-Specific Upregulation of Angiotensin-Converting Enzyme 1 in Spontaneously Hypertensive Rats Through Histone Code Modifications

(2012) Hae-Ahm Lee et al.   HYPERTENSION

The SET-Domain Protein SUVR5 Mediates H3K9me2 Deposition and Silencing at Stimulus Response Genes in a DNA Methylation–Independent Manner

(2012) Elena Caro et al.   PLoS Genetics

Histone Deacetylase HDA6 Is Functionally Associated with AS1 in Repression of KNOX Genes in Arabidopsis

(2012) Ming Luo et al.   PLoS Genetics

MEME-ChIP: motif analysis of large DNA datasets

(2011) Philip Machanick et al.   BIOINFORMATICS

A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo

(2011) E. Rajakumara et al.   GENES & DEVELOPMENT

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

A novel role for histone methyltransferase KYP/SUVH4 in the control of Arabidopsis primary seed dormancy

(2011) Jian Zheng et al.   NEW PHYTOLOGIST

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

Cis-cinnamic acid-enhanced 1 gene plays a role in regulation of Arabidopsis bolting

(2011) Di Guo et al.   PLANT MOLECULAR BIOLOGY

HDA6 Directly Interacts with DNA Methyltransferase MET1 and Maintains Transposable Element Silencing in Arabidopsis

(2011) X. Liu et al.   PLANT PHYSIOLOGY

HISTONE DEACETYLASE6 Interacts with FLOWERING LOCUS D and Regulates Flowering in Arabidopsis

(2011) C.-W. Yu et al.   PLANT PHYSIOLOGY

The SUVR4 Histone Lysine Methyltransferase Binds Ubiquitin and Converts H3K9me1 to H3K9me3 on Transposon Chromatin in Arabidopsis

(2011) Silje V. Veiseth et al.   PLoS Genetics

Histone Methylation in Higher Plants

(2010) Chunyan Liu et al.   Annual Review of Plant Biology

Characterization of genes in theASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES(AS2/LOB) family inArabidopsis thaliana, and functional and molecular comparisons betweenAS2and other family members

(2009) Yoko Matsumura et al.   PLANT JOURNAL

Molecular and Biochemical Characterization of AtPAP15, a Purple Acid Phosphatase with Phytase Activity, in Arabidopsis

(2009) R. Kuang et al.   PLANT PHYSIOLOGY

Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading

(2008) I. R. Henderson et al.   GENES & DEVELOPMENT

 C1, the pathogenicity factor of TYLCCNV, interacts with AS1 to alter leaf development and suppress selective jasmonic acid responses

(2008) J.-Y. Yang et al.   GENES & DEVELOPMENT

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks

(2008) Daniel Zilberman et al.   NATURE

KNOX Lost the OX: The Arabidopsis KNATM Gene Defines a Novel Class of KNOX Transcriptional Regulators Missing the Homeodomain

(2008) E. Magnani et al.   PLANT CELL

Direct Repression of KNOX Loci by the ASYMMETRIC LEAVES1 Complex of Arabidopsis

(2008) M. Guo et al.   PLANT CELL

Genome-Wide Association of Histone H3 Lysine Nine Methylation with CHG DNA Methylation in Arabidopsis thaliana

(2008) Yana V. Bernatavichute et al.   PLoS One

Control of Genic DNA Methylation by a jmjC Domain-Containing Protein in Arabidopsis thaliana

(2008) H. Saze et al.   SCIENCE