Structural Analysis of Bacillus subtilis Sigma Factors

Benchmarking the Accuracy of AlphaFold 2 in Loop Structure Prediction

(2022) Amy O. Stevens et al.   Biomolecules

Using cryo-EM to uncover mechanisms of bacterial transcriptional regulation

(2021) David M. Wood et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models

(2021) Mihaly Varadi et al.   NUCLEIC ACIDS RESEARCH

The current state of SubtiWiki, the database for the model organism Bacillus subtilis

(2021) Tiago Pedreira et al.   NUCLEIC ACIDS RESEARCH

Applying and improving AlphaFold at CASP14

(2021) John Jumper et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Intrinsically disordered proteins: modes of binding with emphasis on disordered domains

(2021) Owen Michael Morris et al.   Open Biology

Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase

(2020) Yeonoh Shin et al.   NUCLEIC ACIDS RESEARCH

The bacterial multidrug resistance regulator BmrR distorts promoter DNA to activate transcription

(2020) Chengli Fang et al.   Nature Communications

Structural analysis of the recognition of the -35 promoter element by SigW from Bacillus subtilis

(2019) Eunju Kwon et al.   PLoS One

Current Developments in Coot for Macromolecular Model Building of Electron Cryo‐microscopy and Crystallographic Data

(2019) Ana Casañal et al.   PROTEIN SCIENCE

Structural and Functional Insights into Bacillus subtilis Sigma Factor Inhibitor, CsfB

(2018) Santiago Martínez-Lumbreras et al.   STRUCTURE

DIALS: implementation and evaluation of a new integration package

(2018) Graeme Winter et al.   Acta Crystallographica Section D-Structural Biology

SIMBAD: a sequence-independent molecular-replacement pipeline

(2018) Adam J. Simpkin et al.   Acta Crystallographica Section D-Structural Biology

High-Resolution Crystal Structure of RpoS Fragment including a Partial Region 1.2 and Region 2 from the Intracellular Pathogen Legionella pneumophila

(2018) Nannan Zhang et al.   Crystals

Solution structure of domain 1.1 of the σAfactor fromBacillus subtilisis preformed for binding to the RNA polymerase core

(2017) Milan Zachrdla et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A novel RNA polymerase-binding protein that interacts with a sigma-factor docking site

(2017) Anna F. Wang Erickson et al.   MOLECULAR MICROBIOLOGY

Structural insights into the regulation of Bacillus subtilis SigW activity by anti-sigma RsiW

(2017) Shankar Raj Devkota et al.   PLoS One

Classic Spotlight: the Heat Shock Response and the Discovery of Alternative Sigma Factors in Escherichia coli

(2016) Richard L. Gourse   JOURNAL OF BACTERIOLOGY

CcpNmr AnalysisAssign: a flexible platform for integrated NMR analysis

(2016) Simon P. Skinner et al.   JOURNAL OF BIOMOLECULAR NMR

The atypical two-subunit σ factor from Bacillus subtilis is regulated by an integral membrane protein and acid stress

(2016) Maria C. Davis et al.   MICROBIOLOGY-SGM

Assessing and maximizing data quality in macromolecular crystallography

(2015) P Andrew Karplus et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Structural Basis of Transcription Inhibition by CBR Hydroxamidines and CBR Pyrazoles

(2015) Yu Feng et al.   STRUCTURE

Bacterial Sigma Factors: A Historical, Structural, and Genomic Perspective

(2014) Andrey Feklístov et al.   Annual Review of Microbiology

σECFfactors of gram-positive bacteria

(2014) Bianca Mendes Souza et al.   Virulence

How good are my data and what is the resolution?

(2013) Philip R. Evans et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PDBe: Protein Data Bank in Europe

(2013) Aleksandras Gutmanas et al.   NUCLEIC ACIDS RESEARCH

Spore formation inBacillus subtilis

(2013) Irene S. Tan et al.   Environmental Microbiology Reports

The Extracytoplasmic Function Sigma Factor SigY Is Important for Efficient Maintenance of the Spβ Prophage That Encodes Sublancin in Bacillus subtilis

(2012) Rebecca Mendez et al.   DNA AND CELL BIOLOGY

REFMAC5 for the refinement of macromolecular crystal structures

(2011) Garib N. Murshudov et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

ISPyB: an information management system for synchrotron macromolecular crystallography

(2011) S. Delageniere et al.   BIOINFORMATICS

Structural Basis for Promoter −10 Element Recognition by the Bacterial RNA Polymerase σ Subunit

(2011) Andrey Feklistov et al.   CELL

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PDB_REDO: automated re-refinement of X-ray structure models in the PDB

(2009) Robbie P. Joosten et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

How the early sporulation sigma factor σFdelays the switch to late development in Bacillus subtilis

(2008) Céline Karmazyn-Campelli et al.   MOLECULAR MICROBIOLOGY