2022 updates to the Rat Genome Database: a Findable, Accessible, Interoperable, and Reusable (FAIR) resource
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Title
2022 updates to the Rat Genome Database: a Findable, Accessible, Interoperable, and Reusable (FAIR) resource
Authors
Keywords
-
Journal
GENETICS
Volume 224, Issue 1, Pages -
Publisher
Oxford University Press (OUP)
Online
2023-03-18
DOI
10.1093/genetics/iyad042
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Note: Only part of the references are listed.- MOET: a web-based gene set enrichment tool at the Rat Genome Database for multiontology and multispecies analyses
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- (2021) Timothe Cezard et al. NUCLEIC ACIDS RESEARCH
- The UCSC Genome Browser database: 2022 update
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- (2016) Mary Shimoyama et al. Database-The Journal of Biological Databases and Curation
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- (2007) K. C. Worley et al. PHYSIOLOGICAL GENOMICS
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