Xenbase: key features and resources of the Xenopus model organism knowledgebase
Published 2023 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Xenbase: key features and resources of the Xenopus model organism knowledgebase
Authors
Keywords
-
Journal
GENETICS
Volume 224, Issue 1, Pages -
Publisher
Oxford University Press (OUP)
Online
2023-02-09
DOI
10.1093/genetics/iyad018
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- InParanoid-DIAMOND: faster orthology analysis with the InParanoid algorithm
- (2022) Emma Persson et al. BIOINFORMATICS
- The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development
- (2022) Malcolm E. Fisher et al. BMC BIOINFORMATICS
- Harmonizing model organism data in the Alliance of Genome Resources
- (2022) et al. GENETICS
- Normal Table of Xenopus development: a new graphical resource
- (2022) Natalya Zahn et al. DEVELOPMENT
- Identification of a unique endoplasmic retention motif in the Xenopus GIRK5 channel and its contribution to oocyte maturation
- (2021) Claudia I. Rangel‐Garcia et al. FEBS Open Bio
- Genomicus in 2022: comparative tools for thousands of genomes and reconstructed ancestors
- (2021) Nga Thi Thuy Nguyen et al. NUCLEIC ACIDS RESEARCH
- PhylomeDB V5: an expanding repository for genome-wide catalogues of annotated gene phylogenies
- (2021) Diego Fuentes et al. NUCLEIC ACIDS RESEARCH
- A unified nomenclature for vertebrate olfactory receptors
- (2020) Tsviya Olender et al. BMC EVOLUTIONARY BIOLOGY
- Neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and brain size in Xenopus embryos
- (2020) Helen Rankin Willsey et al. DEVELOPMENT
- Simple embryo injection of long single-stranded donor templates with the CRISPR/Cas9 system leads to homology-directed repair in Xenopus tropicalis and Xenopus laevis
- (2020) Takuya Nakayama et al. GENESIS
- Xenopus leads the way: Frogs as a pioneering model to understand the human brain
- (2020) Cameron R. T. Exner et al. GENESIS
- Xenbase: Facilitating the Use of Xenopus to Model Human Disease
- (2019) Mardi J. Nenni et al. Frontiers in Physiology
- A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis
- (2019) Therese Mitros et al. DEVELOPMENTAL BIOLOGY
- Modeling congenital kidney diseases in Xenopus laevis
- (2019) Alexandria T. M. Blackburn et al. Disease Models & Mechanisms
- Advancing genetic and genomic technologies deepen the pool for discovery in Xenopus tropicalis
- (2019) Anneke Kakebeen et al. DEVELOPMENTAL DYNAMICS
- Alliance of Genome Resources Portal: unified model organism research platform
- (2019) et al. NUCLEIC ACIDS RESEARCH
- Xenopus: Driving the Discovery of Novel Genes in Patient Disease and Their Underlying Pathological Mechanisms Relevant for Organogenesis
- (2019) Woong Y. Hwang et al. Frontiers in Physiology
- ClinVar: improvements to accessing data
- (2019) Melissa J Landrum et al. NUCLEIC ACIDS RESEARCH
- The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species
- (2019) Kent A Shefchek et al. NUCLEIC ACIDS RESEARCH
- SwiftOrtho: A fast, memory-efficient, multiple genome orthology classifier
- (2019) Xiao Hu et al. GigaScience
- SonicParanoid: fast, accurate, and easy orthology inference
- (2018) Salvatore Cosentino et al. BIOINFORMATICS
- Interpretation of biological experiments changes with evolution of the Gene Ontology and its annotations
- (2018) Aurelie Tomczak et al. Scientific Reports
- PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools
- (2018) Huaiyu Mi et al. NUCLEIC ACIDS RESEARCH
- Candidate Heterotaxy Gene FGFR4 Is Essential for Patterning of the Left-Right Organizer in Xenopus
- (2018) Emily Sempou et al. Frontiers in Physiology
- Xenbase: a genomic, epigenomic and transcriptomic model organism database
- (2017) Kamran Karimi et al. NUCLEIC ACIDS RESEARCH
- Genome evolution in the allotetraploid frog Xenopus laevis
- (2016) Adam M. Session et al. NATURE
- RRIDs: A Simple Step toward Improving Reproducibility through Rigor and Transparency of Experimental Methods
- (2016) Anita E. Bandrowski et al. NEURON
- KEGG: new perspectives on genomes, pathways, diseases and drugs
- (2016) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development
- (2016) Nick D.L. Owens et al. Cell Reports
- The FAIR Guiding Principles for scientific data management and stewardship
- (2016) Mark D. Wilkinson et al. Scientific Data
- CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo
- (2015) Miguel A Moreno-Mateos et al. NATURE METHODS
- Deep Proteomics of the Xenopus laevis Egg using an mRNA-Derived Reference Database
- (2014) Martin Wühr et al. CURRENT BIOLOGY
- The GOA database: Gene Ontology annotation updates for 2015
- (2014) Rachael P. Huntley et al. NUCLEIC ACIDS RESEARCH
- Quantitative proteomics of Xenopus laevis embryos: expression kinetics of nearly 4000 proteins during early development
- (2014) Liangliang Sun et al. Scientific Reports
- Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase
- (2013) Erik Segerdell et al. Journal of Biomedical Semantics
- Local Translation of Extranuclear Lamin B Promotes Axon Maintenance
- (2012) Byung C. Yoon et al. CELL
- Development of xenopus resource centers: The national xenopus resource and the european xenopus resource center
- (2012) Esther J. Pearl et al. GENESIS
- Mutations in IRX5 impair craniofacial development and germ cell migration via SDF1
- (2012) Carine Bonnard et al. NATURE GENETICS
- Developing a biocuration workflow for AgBase, a non-model organism database
- (2012) L. Pillai et al. Database-The Journal of Biological Databases and Curation
- An integrative approach to ortholog prediction for disease-focused and other functional studies
- (2011) Yanhui Hu et al. BMC BIOINFORMATICS
- Proteinortho: Detection of (Co-)orthologs in large-scale analysis
- (2011) Marcus Lechner et al. BMC BIOINFORMATICS
- Modeling the Cell Cycle: Why Do Certain Circuits Oscillate?
- (2011) James E. Ferrell et al. CELL
- Mapping Gene Expression in Two Xenopus Species: Evolutionary Constraints and Developmental Flexibility
- (2011) Itai Yanai et al. DEVELOPMENTAL CELL
- The use ofXenopusoocytes in drug screening
- (2011) Trine Kvist et al. Expert Opinion on Drug Discovery
- Simple, fast, tissue-specific bacterial artificial chromosome transgenesis inXenopus
- (2011) Margaret B. Fish et al. GENESIS
- A neuroprotective role for polyamines in a Xenopus tadpole model of epilepsy
- (2011) Mark R Bell et al. NATURE NEUROSCIENCE
- Rare copy number variations in congenital heart disease patients identify unique genes in left-right patterning
- (2011) K. A. Fakhro et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Xenopus research: metamorphosed by genetics and genomics
- (2011) Richard M. Harland et al. TRENDS IN GENETICS
- The Genome of the Western Clawed Frog Xenopus tropicalis
- (2010) U. Hellsten et al. SCIENCE
- DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources
- (2009) Helen V. Firth et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Learning about cancer from frogs: analysis of mitotic spindles in Xenopus egg extracts
- (2009) M. K. Cross et al. Disease Models & Mechanisms
- National BioResource Project Information Center
- (2009) Yukiko YAMAZAKI et al. EXPERIMENTAL ANIMALS
- Use and misuse of the gene ontology annotations
- (2008) Seung Yon Rhee et al. NATURE REVIEWS GENETICS
- Cardiovascular GO Annotation Initiative Year 1 Report: Why Cardiovascular GO?
- (2008) Ruth C. Lovering et al. PROTEOMICS
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started