Expansion and loss of sperm nuclear basic protein genes in Drosophila correspond with genetic conflicts between sex chromosomes

Novel Classes and Evolutionary Turnover of Histone H2B Variants in the Mammalian Germline

(2022) Pravrutha Raman et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Cif proteins from Wolbachia prophage WO modify sperm genome integrity to establish cytoplasmic incompatibility

(2022) Rupinder Kaur et al.   PLOS BIOLOGY

Evolution of genome structure in the Drosophila simulans species complex

(2021) Mahul Chakraborty et al.   GENOME RESEARCH

Histone variants at a glance

(2021) Paul B. Talbert et al.   JOURNAL OF CELL SCIENCE

Sex chromosome transformation and the origin of a male-specific X chromosome in the creeping vole

(2021) Matthew B. Couger et al.   SCIENCE

Integrated analysis of multimodal single-cell data

(2021) Yuhan Hao et al.   CELL

BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes

(2021) Mosè Manni et al.   MOLECULAR BIOLOGY AND EVOLUTION

A putative de novo evolved gene required for spermatid chromatin condensation in Drosophila melanogaster

(2021) Emily L. Rivard et al.   PLoS Genetics

Single-cell RNA-sequencing reveals pre-meiotic X-chromosome dosage compensation in Drosophila testis

(2021) Evan Witt et al.   PLoS Genetics

Highly contiguous assemblies of 101 drosophilid genomes

(2021) Bernard Y Kim et al.   eLife

Satellite DNA-mediated diversification of a sex-ratio meiotic drive gene family in Drosophila

(2021) Christina A. Muirhead et al.   Nature Ecology & Evolution

New strategies to improve minimap2 alignment accuracy

(2021) Heng Li   BIOINFORMATICS

Widespread introgression across a phylogeny of 155 Drosophila genomes

(2021) Anton Suvorov et al.   CURRENT BIOLOGY

Rapid evolutionary dynamics of an expanding family of meiotic drive factors and their hpRNA suppressors

(2021) Jeffrey Vedanayagam et al.   Nature Ecology & Evolution

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular Evolutionary Genetics Analysis (MEGA) for macOS

(2020) Glen Stecher et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Telomere Paradox: Stable Genome Preservation with Rapidly Evolving Proteins

(2020) Bastien Saint-Leandre et al.   TRENDS IN GENETICS

A Protamine Knockdown Mimics the Function of Sd in Drosophila melanogaster

(2020) Luke F. Gingell et al.   G3-Genes Genomes Genetics

Whole Genome Sequences of 23 Species from the Drosophila montium Species Group (Diptera: Drosophilidae): A Resource for Testing Evolutionary Hypotheses

(2020) Michael J. Bronski et al.   G3-Genes Genomes Genetics

A phylogeny for the Drosophila montium species group: a model clade for comparative analyses

(2020) William R. Conner et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Biparental contributions of the H2A.B histone variant control embryonic development in mice

(2020) Antoine Molaro et al.   PLOS BIOLOGY

Haploid selection drives new gene male germline expression

(2019) Julia B. Raices et al.   GENOME RESEARCH

Recurrent gene co-amplification on Drosophila X and Y chromosomes

(2019) Christopher Ellison et al.   PLoS Genetics

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Protamines from liverwort are produced by post-translational cleavage and C-terminal di-aminopropanelation of several male germ-specific H1 histones

(2019) Robert Anthony D'Ippolito et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Meiotic drive mechanisms: lessons from Drosophila

(2019) Cécile Courret et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Wolbachia cytoplasmic incompatibility enzyme CidB targets nuclear import and protamine-histone exchange factors

(2019) John Frederick Beckmann et al.   eLife

A Genomic Reference Panel for Drosophila serrata

(2018) Adam J. Reddiex et al.   G3-Genes Genomes Genetics

Heterochromatin-Enriched Assemblies Reveal the Sequence and Organization of the Drosophila melanogaster Y Chromosome

(2018) Ching-Ho Chang et al.   GENETICS

An investigation of Y chromosome incorporations in 400 species of Drosophila and related genera

(2018) Eduardo G. Dupim et al.   PLoS Genetics

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

(2017) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Selective constraints on protamine 2 in primates and rodents

(2016) Lena Lüke et al.   BMC EVOLUTIONARY BIOLOGY

The Deadbeat Paternal Effect of Uncapped Sperm Telomeres on Cell Cycle Progression and Chromosome Behavior in Drosophila melanogaster

(2016) Takuo Yamaki et al.   GENETICS

A Thousand Fly Genomes: An ExpandedDrosophilaGenome Nexus

(2016) Justin B. Lack et al.   MOLECULAR BIOLOGY AND EVOLUTION

How sexual selection can drive the evolution of costly sperm ornamentation

(2016) Stefan Lüpold et al.   NATURE

The cnidarian Hydractinia echinata employs canonical and highly adapted histones to pack its DNA

(2016) Anna Török et al.   Epigenetics & Chromatin

TheDrosophilachromosomal protein Mst77F is processed to generate an essential component of mature sperm chromatin

(2016) Shuhei Kimura et al.   Open Biology

The Deadbeat Paternal Effect of Uncapped Sperm Telomeres on Cell Cycle Progression and Chromosome Behavior in Drosophila melanogaster

(2016) Takuo Yamaki et al.   GENETICS

Sperm Nuclear Basic Proteins of Tunicates and the Origin of Protamines

(2016) Núria Saperas et al.   BIOLOGICAL BULLETIN

The HMG-box-containing proteins tHMG-1 and tHMG-2 interact during the histone-to-protamine transition in Drosophila spermatogenesis

(2015) Stefanie M.K. Gärtner et al.   EUROPEAN JOURNAL OF CELL BIOLOGY

Sexual Selection of Protamine 1 in Mammals

(2015) Lena Lüke et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Testis-Specific Chaperone and the Chromatin Remodeler ISWI Mediate Repackaging of the Paternal Genome

(2015) Cécile M. Doyen et al.   Cell Reports

Prtl99C Acts Together with Protamines and Safeguards Male Fertility in Drosophila

(2015) Zeynep Eren-Ghiani et al.   Cell Reports

Long-Read Single Molecule Sequencing to Resolve Tandem Gene Copies: The Mst77Y Region on the Drosophila melanogaster Y Chromosome

(2015) F. J. Krsticevic et al.   G3-Genes Genomes Genetics

Mitotic fidelity requires transgenerational action of a testis-restricted HP1

(2015) Mia T Levine et al.   eLife

Sexual selection on protamine and transition nuclear protein expression in mouse species

(2014) L. Luke et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Drosophila Protamine-Like Mst35Ba and Mst35Bb Are Required for Proper Sperm Nuclear Morphology but Are Dispensable for Male Fertility

(2014) Samantha Tirmarche et al.   G3-Genes Genomes Genetics

Three levels of regulation lead to protamine and Mst77F expression in Drosophila

(2013) Bridlin Barckmann et al.   DEVELOPMENTAL BIOLOGY

Stepwise Evolution of Essential Centromere Function in a Drosophila Neogene

(2013) B. D. Ross et al.   SCIENCE

Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans

(2012) Qi Zhou et al.   BMC GENOMICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Protamine 3 Shows Evidence of Weak, Positive Selection in Mouse Species (Genus Mus)--But It Is Not a Protamine

(2010) J. Martin-Coello et al.   BIOLOGY OF REPRODUCTION

Distinct functions of Mst77F and protamines in nuclear shaping and chromatin condensation during Drosophila spermiogenesis

(2010) Christina Rathke et al.   EUROPEAN JOURNAL OF CELL BIOLOGY

Origin and evolution of chromosomal sperm proteins

(2009) José M. Eirín-López et al.   BIOESSAYS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Altered Heterochromatin Binding by a Hybrid Sterility Protein in Drosophila Sibling Species

(2009) J. J. Bayes et al.   SCIENCE

Wolbachia-Mediated Cytoplasmic Incompatibility Is Associated with Impaired Histone Deposition in the Male Pronucleus

(2009) Frédéric Landmann et al.   PLoS Pathogens

Standard and generalized McDonald-Kreitman test: a website to detect selection by comparing different classes of DNA sites

(2008) R. Egea et al.   NUCLEIC ACIDS RESEARCH