An Overview of Ecological Indicators of Fish to Evaluate the Anthropogenic Pressures in Aquatic Ecosystems: From Traditional to Innovative DNA-Based Approaches
Published 2023 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
An Overview of Ecological Indicators of Fish to Evaluate the Anthropogenic Pressures in Aquatic Ecosystems: From Traditional to Innovative DNA-Based Approaches
Authors
Keywords
-
Journal
Water
Volume 15, Issue 5, Pages 949
Publisher
MDPI AG
Online
2023-03-02
DOI
10.3390/w15050949
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The Effect of Short-Term Upwelling Events on Fish Assemblages at the South-Eastern Coast of the Baltic Sea
- (2023) Toma Dabuleviciene et al. Water
- Comparing eDNA metabarcoding primers for assessing fish communities in a biodiverse estuary
- (2022) Girish Kumar et al. PLoS One
- Modeling of Water Quality in West Ukrainian Rivers Based on Fluctuating Asymmetry of the Fish Population
- (2022) Yuliia Trach et al. Water
- Exploring the Biodiversity of a European NATURA 2000 Mediterranean Lagoon through eDNA Metabarcoding
- (2022) Valeria Specchia et al. Diversity-Basel
- Using eDNA Metabarcoding to Monitor Changes in Fish Community Composition After Barrier Removal
- (2021) Teja P. Muha et al. Frontiers in Ecology and Evolution
- eDNA Detection of Native and Invasive Crayfish Species Allows for Year-Round Monitoring and Large-Scale Screening of Lotic Systems
- (2021) Franziska Chucholl et al. Frontiers in Environmental Science
- Illumina iSeq 100 and MiSeq exhibit similar performance in freshwater fish environmental DNA metabarcoding
- (2021) Ryohei Nakao et al. Scientific Reports
- Congruency between two traditional and eDNA-based sampling methods in characterising taxonomic and trait-based structure of fish communities and community-environment relationships in lentic environment
- (2021) István Czeglédi et al. ECOLOGICAL INDICATORS
- Co-occurrence of Bacillariophyceae-based- and Cryptophyceae-based planktonic food webs in a temperate estuarine ecosystem revealed via eDNA
- (2021) Yoonja Kang et al. ESTUARINE COASTAL AND SHELF SCIENCE
- Testing the Sensitivity and Limitations of Frequently Used Aquatic Biota Indices in Temperate Mountain Streams and Plain Streams of China
- (2021) Nan Zhang et al. Water
- Development of a Fish-Based Multimetric Index for the Assessment of Lagoons’ Ecological Quality in Northern Greece
- (2021) Argyrios S. Sapounidis et al. Water
- Current limitations and future prospects of detection and biomonitoring of NIS in the Mediterranean Sea through environmental DNA
- (2021) Francesco Zangaro et al. NeoBiota
- Environmental DNA reveals seasonal shifts and potential interactions in a marine community
- (2020) Anni Djurhuus et al. Nature Communications
- Monitoring freshwater fish communities in large rivers using environmental DNA ( eDNA ) metabarcoding and a long‐term electrofishing survey
- (2020) Aurélie Goutte et al. JOURNAL OF FISH BIOLOGY
- A Fish-Based Index of Biotic Integrity for Neotropical Rainforest Sandy Soil Streams—Southern Brazil
- (2020) Gabriel Gonino et al. Water
- Lagoon Resident Fish Species of Conservation Interest According to the Habitat Directive (92/43/CEE): A Review on Their Potential Use as Ecological Indicator Species
- (2020) Chiara Facca et al. Water
- Gap Analysis for DNA Barcode Reference Libraries for Aquatic Macroinvertebrate Species in the Apulia Region (Southeast of Italy)
- (2020) Valeria Specchia et al. Journal of Marine Science and Engineering
- MiFish metabarcoding: a high-throughput approach for simultaneous detection of multiple fish species from environmental DNA and other samples
- (2020) Masaki Miya et al. FISHERIES SCIENCE
- Database resources of the National Center for Biotechnology Information
- (2020) Eric W Sayers et al. NUCLEIC ACIDS RESEARCH
- A comprehensive and comparative evaluation of primers for metabarcoding eDNA from fish
- (2020) Shan Zhang et al. Methods in Ecology and Evolution
- The ‘triple whammy’ of coasts under threat – Why we should be worried!
- (2020) Omar Defeo et al. MARINE POLLUTION BULLETIN
- Assessment of Anthropogenic Impact versus Climate Change on the Succession of the Diatom Community in Lugu Lake (Yunnan-Guizhou Plateau, China) Using the Sedimentary Record of Geochemical Elements
- (2019) Yi Liu et al. Water
- Environmental DNA metabarcoding as an effective and rapid tool for fish monitoring in canals
- (2019) Allan D. McDevitt et al. JOURNAL OF FISH BIOLOGY
- DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work
- (2019) Hannah Weigand et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Non‐specific amplification compromises environmental DNA metabarcoding with COI
- (2019) Rupert A. Collins et al. Methods in Ecology and Evolution
- Using vertebrate environmental DNA from seawater in biomonitoring of marine habitats
- (2019) Eva Egelyng Sigsgaard et al. CONSERVATION BIOLOGY
- Population‐level inferences from environmental DNA—Current status and future perspectives
- (2019) Eva Egelyng Sigsgaard et al. Evolutionary Applications
- eDNA metabarcoding as a promising conservation tool for monitoring fish diversity in a coastal wetland of the Pearl River Estuary compared to bottom trawling
- (2019) Keshu Zou et al. SCIENCE OF THE TOTAL ENVIRONMENT
- The choice of universal primers and the characteristics of the species mixture determine when DNA metabarcoding can be quantitative
- (2018) Josep Piñol et al. MOLECULAR ECOLOGY
- Unlocking biodiversity and conservation studies in high-diversity environments using environmental DNA (eDNA): A test with Guianese freshwater fishes
- (2018) Kévin Cilleros et al. Molecular Ecology Resources
- Seawater environmental DNA reflects seasonality of a coastal fish community
- (2017) Eva Egelyng Sigsgaard et al. MARINE BIOLOGY
- Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment
- (2017) Michael Stat et al. Scientific Reports
- Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea
- (2017) Satoshi Yamamoto et al. Scientific Reports
- The Water Framework Directive: advances in fish classification tools in Ireland
- (2016) Fiona L. Kelly et al. BIOLOGY AND ENVIRONMENT-PROCEEDINGS OF THE ROYAL IRISH ACADEMY
- Influence of aperiodic summer droughts on leaf litter breakdown and macroinvertebrate assemblages: testing the drying memory in a Central Apennines River (Aterno River, Italy)
- (2016) Maurizio Pinna et al. HYDROBIOLOGIA
- In silico assessment of primers for eDNA studies using PrimerTree and application to characterize the biodiversity surrounding the Cuyahoga River
- (2016) M. V. Cannon et al. Scientific Reports
- Environmental DNA as a ‘Snapshot’ of Fish Distribution: A Case Study of Japanese Jack Mackerel in Maizuru Bay, Sea of Japan
- (2016) Satoshi Yamamoto et al. PLoS One
- Environmental DNA from Seawater Samples Correlate with Trawl Catches of Subarctic, Deepwater Fishes
- (2016) Philip Francis Thomsen et al. PLoS One
- Using environmental DNA methods to improve detectability in a hellbender (Cryptobranchus alleganiensis) monitoring program
- (2015) Stephen F. Spear et al. BIOLOGICAL CONSERVATION
- Monitoring the near-extinct European weather loach in Denmark based on environmental DNA from water samples
- (2015) Eva Egelyng Sigsgaard et al. BIOLOGICAL CONSERVATION
- Environmental DNA sampling is more sensitive than a traditional survey technique for detecting an aquatic invader
- (2015) Adam S. Smart et al. ECOLOGICAL APPLICATIONS
- Contribution of water chemistry and fish condition to otolith chemistry: comparisons across salinity environments
- (2015) C. Izzo et al. JOURNAL OF FISH BIOLOGY
- Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding
- (2015) Nathan T. Evans et al. Molecular Ecology Resources
- Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood
- (2014) Kenneth G Frey et al. BMC GENOMICS
- The Release Rate of Environmental DNA from Juvenile and Adult Fish
- (2014) Atsushi Maruyama et al. PLoS One
- A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
- (2012) Michael Quail et al. BMC GENOMICS
- Evaluating marine ecosystem health: Case studies of indicators using direct observations and modelling methods
- (2012) I. Rombouts et al. ECOLOGICAL INDICATORS
- An evolving role for ecological indicators: From documenting ecological conditions to monitoring drivers and policy responses
- (2012) David J. Rapport et al. ECOLOGICAL INDICATORS
- Transitional and coastal waters ecological status assessment: advances and challenges resulting from implementing the European Water Framework Directive
- (2012) Angel Borja et al. HYDROBIOLOGIA
- Investigating the Potential Use of Environmental DNA (eDNA) for Genetic Monitoring of Marine Mammals
- (2012) Andrew D. Foote et al. PLoS One
- Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples
- (2012) Philip Francis Thomsen et al. PLoS One
- Three hundred ways to assess Europe's surface waters: An almost complete overview of biological methods to implement the Water Framework Directive
- (2011) Sebastian Birk et al. ECOLOGICAL INDICATORS
- Monitoring endangered freshwater biodiversity using environmental DNA
- (2011) PHILIP FRANCIS THOMSEN et al. MOLECULAR ECOLOGY
- Tolerance limit for fish growth exceeded by warming waters
- (2011) A. B. Neuheimer et al. Nature Climate Change
- Can simple be useful and reliable? Using ecological indicators to represent and compare the states of marine ecosystems
- (2010) Y. J. Shin et al. ICES JOURNAL OF MARINE SCIENCE
- Development of a fish-based index to assess the ecological quality of transitional waters: The case of French estuaries
- (2010) C. Delpech et al. MARINE POLLUTION BULLETIN
- Body size-dependent responses of a marine fish assemblage to climate change and fishing over a century-long scale
- (2009) MARTIN J. GENNER et al. GLOBAL CHANGE BIOLOGY
- A DNA barcode for land plants
- (2009) et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Species detection using environmental DNA from water samples
- (2008) G. F. Ficetola et al. Biology Letters
- Development of a fish-based multimetric index to assess the ecological quality of marine habitats: the Marine Fish Community Index
- (2008) Sofia Henriques et al. MARINE POLLUTION BULLETIN
- Ecosystem Overfishing in the Ocean
- (2008) Marta Coll et al. PLoS One
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now