Feedback circuits are numerous in embryonic gene regulatory networks and offer a stabilizing influence on evolution of those networks

Developmental single-cell transcriptomics in the Lytechinus variegatus sea urchin embryo

(2021) Abdull J. Massri et al.   DEVELOPMENT

Biological feedback control—Respect the loops

(2021) Hana El-Samad   Cell Systems

Genetic basis for divergence in developmental gene expression in two closely related sea urchins

(2020) Lingyu Wang et al.   Nature Ecology & Evolution

RNA-Mediated Feedback Control of Transcriptional Condensates

(2020) Jonathan E. Henninger et al.   CELL

Systematic comparison of sea urchin and sea star developmental gene regulatory networks explains how novelty is incorporated in early development

(2020) Gregory A. Cary et al.   Nature Communications

Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming

(2019) Geoffrey Schiebinger et al.   CELL

A comparative analysis of egg provisioning using mass spectrometry during rapid life history evolution in sea urchins

(2019) Phillip L. Davidson et al.   EVOLUTION & DEVELOPMENT

Early development of the feeding larva of the sea urchin Heliocidaris tuberculata: role of the small micromeres

(2018) Valerie B. Morris et al.   DEVELOPMENT GENES AND EVOLUTION

Regulatory heterochronies and loose temporal scaling between sea star and sea urchin regulatory circuits

(2017) Tsvia Gildor et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

New insights from a high-resolution look at gastrulation in the sea urchin, Lytechinus variegatus

(2017) Megan L. Martik et al.   MECHANISMS OF DEVELOPMENT

Developmental mechanisms of stripe patterns in rodents

(2016) Ricardo Mallarino et al.   NATURE

Comparative Developmental Transcriptomics Reveals Rewiring of a Highly Conserved Gene Regulatory Network during a Major Life History Switch in the Sea Urchin Genus Heliocidaris

(2016) Jennifer W. Israel et al.   PLOS BIOLOGY

Evolutionary rewiring of gene regulatory network linkages at divergence of the echinoid subclasses

(2015) Eric M. Erkenbrack et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative Study of Regulatory Circuits in Two Sea Urchin Species Reveals Tight Control of Timing and High Conservation of Expression Dynamics

(2015) Tsvia Gildor et al.   PLoS Genetics

Sub-circuits of a gene regulatory network control a developmental epithelial-mesenchymal transition

(2014) L. R. Saunders et al.   DEVELOPMENT

Encoding regulatory state boundaries in the pregastrular oral ectoderm of the sea urchin embryo

(2014) E. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New regulatory circuit controlling spatial and temporal gene expression in the sea urchin embryo oral ectoderm GRN

(2013) Enhu Li et al.   DEVELOPMENTAL BIOLOGY

Transcriptome analysis reveals novel patterning and pigmentation genes underlying Heliconius butterfly wing pattern variation

(2012) Heather M Hines et al.   BMC GENOMICS

Direct and indirect control of oral ectoderm regulatory gene expression by Nodal signaling in the sea urchin embryo

(2012) Enhu Li et al.   DEVELOPMENTAL BIOLOGY

Gene regulatory control in the sea urchin aboral ectoderm: Spatial initiation, signaling inputs, and cell fate lockdown

(2012) Smadar Ben-Tabou de-Leon et al.   DEVELOPMENTAL BIOLOGY

Reciprocal Signaling between the Ectoderm and a Mesendodermal Left-Right Organizer Directs Left-Right Determination in the Sea Urchin Embryo

(2012) Nathalie Bessodes et al.   PLoS Genetics

The phylogeny and classification of post-Palaeozoic echinoids

(2011) Andreas Kroh et al.   JOURNAL OF SYSTEMATIC PALAEONTOLOGY

A gene regulatory network controlling the embryonic specification of endoderm

(2011) Isabelle S. Peter et al.   NATURE

Morphogenesis in sea urchin embryos: linking cellular events to gene regulatory network states

(2011) Deirdre C. Lyons et al.   Wiley Interdisciplinary Reviews-Developmental Biology

Egg Energetics, Fertilization Kinetics, and Population Structure in Echinoids With Facultatively Feeding Larvae

(2010) Kirk S. Zigler et al.   BIOLOGICAL BULLETIN

Co-option and dissociation in larval origins and evolution: the sea urchin larval gut

(2010) Alan C. Love et al.   EVOLUTION & DEVELOPMENT

High accuracy, high-resolution prevalence measurement for the majority of locally expressed regulatory genes in early sea urchin development

(2010) Stefan C. Materna et al.   GENE EXPRESSION PATTERNS

Ancestral Regulatory Circuits Governing Ectoderm Patterning Downstream of Nodal and BMP2/4 Revealed by Gene Regulatory Network Analysis in an Echinoderm

(2010) Alexandra Saudemont et al.   PLoS Genetics

Network design principles from the sea urchin embryo

(2009) Eric H Davidson   CURRENT OPINION IN GENETICS & DEVELOPMENT

Dynamics of Delta/Notch signaling on endomesoderm segregation in the sea urchin embryo

(2009) J. C. Croce et al.   DEVELOPMENT

Nodal and BMP2/4 pattern the mesoderm and endoderm during development of the sea urchin embryo

(2009) Véronique Duboc et al.   DEVELOPMENT

A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo

(2009) Yi-Hsien Su et al.   DEVELOPMENTAL BIOLOGY

The endoderm gene regulatory network in sea urchin embryos up to mid-blastula stage

(2009) Isabelle S. Peter et al.   DEVELOPMENTAL BIOLOGY

The evolution of hierarchical gene regulatory networks

(2009) Douglas H. Erwin et al.   NATURE REVIEWS GENETICS

Visualization, documentation, analysis, and communication of large-scale gene regulatory networks

(2008) William J.R. Longabaugh et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Twist is an essential regulator of the skeletogenic gene regulatory network in the sea urchin embryo

(2008) Shu-Yu Wu et al.   DEVELOPMENTAL BIOLOGY

Longevity and lack of senescence in the red sea urchin Strongylocentrotus franciscanus

(2008) Thomas A. Ebert   EXPERIMENTAL GERONTOLOGY

Feedback Loops Shape Cellular Signals in Space and Time

(2008) O. Brandman et al.   SCIENCE