Systematic comparison of sea urchin and sea star developmental gene regulatory networks explains how novelty is incorporated in early development

pmar1/phb homeobox genes and the evolution of the double-negative gate for endomesoderm specification in echinoderms

(2020) Atsuko Yamazaki et al.   DEVELOPMENT

Developmental transcriptomes of the sea star, Patiria miniata, illuminate how gene expression changes with evolutionary distance

(2019) Tsvia Gildor et al.   Scientific Reports

Nodal induces sequential restriction of germ cell factors during primordial germ cell specification

(2018) Tara M. Fresques et al.   DEVELOPMENT

The crown-of-thorns starfish genome as a guide for biocontrol of this coral reef pest

(2017) Michael R. Hall et al.   NATURE

Do as I say, Not(ch) as I do: Lateral control of cell fate

(2017) Marika Sjöqvist et al.   DEVELOPMENTAL BIOLOGY

Ancestral state reconstruction by comparative analysis of a GRN kernel operating in echinoderms

(2016) Eric M. Erkenbrack et al.   DEVELOPMENT GENES AND EVOLUTION

The mid-developmental transition and the evolution of animal body plans

(2016) Michal Levin et al.   NATURE

Large-scale gene expression study in the ophiuroid Amphiura filiformis provides insights into evolution of gene regulatory networks

(2016) David Viktor Dylus et al.   EvoDevo

Hemichordate genomes and deuterostome origins

(2015) Oleg Simakov et al.   NATURE

Evolutionary rewiring of gene regulatory network linkages at divergence of the echinoid subclasses

(2015) Eric M. Erkenbrack et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deployment of a retinal determination gene network drives directed cell migration in the sea urchin embryo

(2015) Megan L Martik et al.   eLife

Dose-dependent nuclear  -catenin response segregates endomesoderm along the sea star primary axis

(2014) B. S. McCauley et al.   DEVELOPMENT

Larval mesenchyme cell specification in the primitive echinoid occurs independently of the double-negative gate

(2014) A. Yamazaki et al.   DEVELOPMENT

A Method for Microinjection of Patiria minata Zygotes

(2014) Alys M. Cheatle Jarvela et al.   Jove-Journal of Visualized Experiments

Intact cluster and chordate-like expression of ParaHox genes in a sea star

(2013) Rossella Annunziata et al.   BMC BIOLOGY

Selective accumulation of germ-line associated gene products in early development of the sea star and distinct differences from germ-line development in the sea urchin

(2013) Tara Fresques et al.   DEVELOPMENTAL DYNAMICS

Expression of wnt and frizzled genes during early sea star development

(2013) Brenna S. McCauley et al.   GENE EXPRESSION PATTERNS

Gene regulatory network for neurogenesis in a sea star embryo connects broad neural specification and localized patterning

(2013) K. A. Yankura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A comprehensive analysis of Delta signaling in pre-gastrular sea urchin embryos

(2012) Stefan C. Materna et al.   DEVELOPMENTAL BIOLOGY

Predictive computation of genomic logic processing functions in embryonic development

(2012) I. S. Peter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of an embryonic skeletogenic mesenchyme lineage in a sea cucumber reveals the trajectory of change for the evolution of novel structures in echinoderms

(2012) Brenna S McCauley et al.   EvoDevo

Notch signaling in the pancreas: patterning and cell fate specification

(2012) Solomon Afelik et al.   Wiley Interdisciplinary Reviews-Developmental Biology

Uncoupling of complex regulatory patterning during evolution of larval development in echinoderms

(2011) Kristen A Yankura et al.   BMC BIOLOGY

A gene regulatory network controlling the embryonic specification of endoderm

(2011) Isabelle S. Peter et al.   NATURE

Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis

(2011) Naoki Irie et al.   Nature Communications

Activation of the skeletogenic gene regulatory network in the early sea urchin embryo

(2010) T. Sharma et al.   DEVELOPMENT

Gene expression divergence recapitulates the developmental hourglass model

(2010) Alex T. Kalinka et al.   NATURE

A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns

(2010) Tomislav Domazet-Lošo et al.   NATURE

Dynamics of Delta/Notch signaling on endomesoderm segregation in the sea urchin embryo

(2009) J. C. Croce et al.   DEVELOPMENT

A conserved gene regulatory network subcircuit drives different developmental fates in the vegetal pole of highly divergent echinoderm embryos

(2009) Brenna S. McCauley et al.   DEVELOPMENTAL BIOLOGY

Genomic control of patterning

(2009) Isabelle S. Peter et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

The evolution of hierarchical gene regulatory networks

(2009) Douglas H. Erwin et al.   NATURE REVIEWS GENETICS

Visualization, documentation, analysis, and communication of large-scale gene regulatory networks

(2008) William J.R. Longabaugh et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

A protocol for unraveling gene regulatory networks

(2008) Stefan C Materna et al.   Nature Protocols

SpBase: the sea urchin genome database and web site

(2008) R. A. Cameron et al.   NUCLEIC ACIDS RESEARCH

Gene regulatory network subcircuit controlling a dynamic spatial pattern of signaling in the sea urchin embryo

(2008) J. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global regulatory logic for specification of an embryonic cell lineage

(2008) P. Oliveri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA