SAMPL is a high-throughput solution to study unconstrained vertical behavior in small animals

Multi-animal pose estimation, identification and tracking with DeepLabCut

(2022) Jessy Lauer et al.   NATURE METHODS

Translational relevance of forward genetic screens in animal models for the study of psychiatric disease

(2022) Eva Sheardown et al.   NEUROSCIENCE AND BIOBEHAVIORAL REVIEWS

Mechanisms of Variability Underlying Odor-Guided Locomotion

(2022) Liangyu Tao et al.   Frontiers in Behavioral Neuroscience

Precise Quantification of Behavioral Individuality From 80 Million Decisions Across 183,000 Flies

(2022) Benjamin de Bivort et al.   Frontiers in Behavioral Neuroscience

The Astropy Project: Sustaining and Growing a Community-oriented Open-source Project and the Latest Major Release (v5.0) of the Core Package*

(2022) The Astropy Collaboration et al.   ASTROPHYSICAL JOURNAL

Gigapixel imaging with a novel multi-camera array microscope

(2022) Eric Thomson et al.   eLife

A three-dimensional habitat for C. elegans environmental enrichment

(2021) Aurélie Guisnet et al.   PLoS One

A Customizable Low-Cost System for Massively Parallel Zebrafish Behavioral Phenotyping

(2021) William Joo et al.   Frontiers in Behavioral Neuroscience

Caenorhabditis elegans exhibits positive gravitaxis

(2021) Wei-Long Chen et al.   BMC BIOLOGY

LiftPose3D, a deep learning-based approach for transforming two-dimensional to three-dimensional poses in laboratory animals

(2021) Adam Gosztolai et al.   NATURE METHODS

Zebrafish disease models in drug discovery: from preclinical modelling to clinical trials

(2021) E. Elizabeth Patton et al.   NATURE REVIEWS DRUG DISCOVERY

MIC-Drop: A platform for large-scale in vivo CRISPR screens

(2021) Saba Parvez et al.   SCIENCE

Spherical arena reveals optokinetic response tuning to stimulus location, size, and frequency across entire visual field of larval zebrafish

(2021) Florian A Dehmelt et al.   eLife

Heritable variation in locomotion, reward sensitivity and impulsive behaviors in a genetically diverse inbred mouse panel

(2021) Lauren S. Bailey et al.   GENES BRAIN AND BEHAVIOR

SciPy 1.0: fundamental algorithms for scientific computing in Python

(2020) Pauli Virtanen et al.   NATURE METHODS

From behavior to circuit modeling of light-seeking navigation in zebrafish larvae

(2020) Sophia Karpenko et al.   eLife

Stimulus-specific behavioral responses of zebrafish to a large range of odors exhibit individual variability

(2020) Florence Kermen et al.   BMC BIOLOGY

Array programming with NumPy

(2020) Charles R. Harris et al.   NATURE

The Neuroanatomical Ultrastructure and Function of a Biological Ring Attractor

(2020) Daniel B. Turner-Evans et al.   NEURON

Sample size, power and effect size revisited: simplified and practical approaches in pre-clinical, clinical and laboratory studies

(2020) Ceyhan Ceran Serdar et al.   Biochemia Medica

Encoding of Wind Direction by Central Neurons in Drosophila

(2019) Marie P. Suver et al.   NEURON

Stytra: An open-source, integrated system for stimulation, tracking and closed-loop behavioral experiments

(2019) Vilim Štih et al.   PLoS Computational Biology

Developing zebrafish disease models for in vivo small molecule screens

(2019) Pui-Ying Lam et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Computational Neuroethology: A Call to Action

(2019) Sandeep Robert Datta et al.   NEURON

Emergence of consistent intra-individual locomotor patterns during zebrafish development

(2019) Jennifer A. Fitzgerald et al.   Scientific Reports

A primal role for the vestibular sense in the development of coordinated locomotion

(2019) David E Ehrlich et al.   eLife

Elements of a stochastic 3D prediction engine in larval zebrafish prey capture

(2019) Andrew D Bolton et al.   eLife

Qualitative postural control differences in Idiopathic Parkinson’s Disease vs. Progressive Supranuclear Palsy with dynamic-on-static platform tilt

(2018) Stefan Kammermeier et al.   CLINICAL NEUROPHYSIOLOGY

Stochasticity, individuality and behavior

(2018) Kyle Honegger et al.   CURRENT BIOLOGY

Structure of the Zebrafish Locomotor Repertoire Revealed with Unsupervised Behavioral Clustering

(2018) João C. Marques et al.   CURRENT BIOLOGY

Development of vestibular behaviors in zebrafish

(2018) Martha W Bagnall et al.   CURRENT OPINION IN NEUROBIOLOGY

A Rapid Method for Directed Gene Knockout for Screening in G0 Zebrafish

(2018) Roland S. Wu et al.   DEVELOPMENTAL CELL

Caenorhabditis elegans as a model system for target identification and drug screening against neurodegenerative diseases

(2018) Liang Ma et al.   EUROPEAN JOURNAL OF PHARMACOLOGY

Neurological disorders of gait, balance and posture: a sign-based approach

(2018) Jorik Nonnekes et al.   Nature Reviews Neurology

Principles Governing Locomotion in Vertebrates: Lessons From Zebrafish

(2018) Eva M. Berg et al.   Frontiers in Neural Circuits

Elementary sensory-motor transformations underlying olfactory navigation in walking fruit-flies

(2018) Efrén Álvarez-Salvado et al.   eLife

Understanding falls in progressive supranuclear palsy

(2017) Brent Bluett et al.   PARKINSONISM & RELATED DISORDERS

Neck Vibration Proprioceptive Postural Response Intact in Progressive Supranuclear Palsy unlike Idiopathic Parkinson’s Disease

(2017) Stefan Kammermeier et al.   Frontiers in Neurology

Impaired perception of surface tilt in progressive supranuclear palsy

(2017) Marian L. Dale et al.   PLoS One

The Heidelberg Screen for Pattern Mutants of Drosophila: A Personal Account

(2016) Eric Wieschaus et al.   Annual Review of Cell and Developmental Biology

3-D Maps and Compasses in the Brain

(2016) Arseny Finkelstein et al.   Annual Review of Neuroscience

Neuromodulatory Regulation of Behavioral Individuality in Zebrafish

(2016) Carlos Pantoja et al.   NEURON

The phenotypic spectrum of progressive supranuclear palsy

(2016) G. Respondek et al.   PARKINSONISM & RELATED DISORDERS

Predictability and hierarchy inDrosophilabehavior

(2016) Gordon J. Berman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An autopsy-confirmed case of progressive supranuclear palsy with predominant postural instability

(2016) Carolin Kurz et al.   Acta Neuropathologica Communications

15 years of zebrafish chemical screening

(2015) Andrew J Rennekamp et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Discriminating features of gait performance in progressive supranuclear palsy

(2015) Shinichi Amano et al.   PARKINSONISM & RELATED DISORDERS

Neuropeptidergic Signaling Partitions Arousal Behaviors in Zebrafish

(2014) I. G. Woods et al.   JOURNAL OF NEUROSCIENCE

Dynamic sensory cues shape song structure in Drosophila

(2014) Philip Coen et al.   NATURE

Quantification of larval zebrafish motor function in multiwell plates using open-source MATLAB applications

(2014) Yangzhong Zhou et al.   Nature Protocols

Neural Control and Modulation of Swimming Speed in the Larval Zebrafish

(2014) Kristen E. Severi et al.   NEURON

A suppression hierarchy among competing motor programs drives sequential grooming in Drosophila

(2014) Andrew M Seeds et al.   eLife

TigarBcauses mitochondrial dysfunction and neuronal loss in PINK1 deficiency

(2013) Laura J. Flinn et al.   ANNALS OF NEUROLOGY

Inter-Individual and Inter-Strain Variations in Zebrafish Locomotor Ontogeny

(2013) Merlin Lange et al.   PLoS One

ZebraZoom: an automated program for high-throughput behavioral analysis and categorization

(2013) Olivier Mirat et al.   Frontiers in Neural Circuits

Quantification of locomotor activity in larval zebrafish: considerations for the design of high-throughput behavioral studies

(2013) Justin J. Ingebretson et al.   Frontiers in Neural Circuits

Video tracking and analysis of sleep in Drosophila melanogaster

(2012) Giorgio F Gilestro   Nature Protocols

Proprioceptive Coupling within Motor Neurons Drives C. elegans Forward Locomotion

(2012) Quan Wen et al.   NEURON

Analysis of focus measure operators for shape-from-focus

(2012) Said Pertuz et al.   PATTERN RECOGNITION

Rheotaxis in Larval Zebrafish Is Mediated by Lateral Line Mechanosensory Hair Cells

(2012) Arminda Suli et al.   PLoS One

The Zebrafish Homologue of the Human DYT1 Dystonia Gene Is Widely Expressed in CNS Neurons but Non-Essential for Early Motor System Development

(2012) Jonathan J. Sager et al.   PLoS One

Measuring thigmotaxis in larval zebrafish

(2011) S.J. Schnörr et al.   BEHAVIOURAL BRAIN RESEARCH

Caenorhabditis elegans selects distinct crawling and swimming gaits via dopamine and serotonin

(2011) A. Vidal-Gadea et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comprehensive catecholaminergic projectome analysis reveals single-neuron integration of zebrafish ascending and descending dopaminergic systems

(2011) Tuan Leng Tay et al.   Nature Communications

Rapid behavior-based identification of neuroactive small molecules in the zebrafish

(2010) David Kokel et al.   Nature Chemical Biology

Dopaminergic cell damage and vulnerability to MPTP in Pink1 knockdown zebrafish

(2010) Ville Sallinen et al.   NEUROBIOLOGY OF DISEASE

Biomechanical analysis of gait adaptation in the nematode Caenorhabditis elegans

(2010) C. Fang-Yen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Zebrafish Behavioral Profiling Links Drugs to Biological Targets and Rest/Wake Regulation

(2010) J. Rihel et al.   SCIENCE

The Disturbance of Gaze in Progressive Supranuclear Palsy: Implications for Pathogenesis

(2010) Athena L. Chen et al.   Frontiers in Neurology

The Human Vertical Translational Vestibulo-ocular Reflex

(2009) Ke Liao et al.   Annals of the New York Academy of Sciences

Disorders of Balance and Vestibular Function in US Adults

(2009) Yuri Agrawal et al.   ARCHIVES OF INTERNAL MEDICINE

Complex I deficiency and dopaminergic neuronal cell loss in parkin-deficient zebrafish (Danio rerio)

(2009) L. Flinn et al.   BRAIN

Anatomy of zebrafish cerebellum and screen for mutations affecting its development

(2009) Young-Ki Bae et al.   DEVELOPMENTAL BIOLOGY

Selective neuronal requirement for huntingtin in the developing zebrafish

(2009) T. L. Henshall et al.   HUMAN MOLECULAR GENETICS

The Brain in Its Body: Motor Control and Sensing in a Biomechanical Context

(2009) H. J. Chiel et al.   JOURNAL OF NEUROSCIENCE

Decreased BDNF Levels Are a Major Contributor to the Embryonic Phenotype of Huntingtin Knockdown Zebrafish

(2009) H. Diekmann et al.   JOURNAL OF NEUROSCIENCE

Parallel Use of Two Behavioral Mechanisms for Chemotaxis in Caenorhabditis elegans

(2009) Y. Iino et al.   JOURNAL OF NEUROSCIENCE

Functional Role of a Specialized Class of Spinal Commissural Inhibitory Neurons during Fast Escapes in Zebrafish

(2009) C. Satou et al.   JOURNAL OF NEUROSCIENCE

The neural basis of Drosophila gravity-sensing and hearing

(2009) Azusa Kamikouchi et al.   NATURE

Methods for quantifying simple gravity sensing in Drosophila melanogaster

(2009) Hidehiko K Inagaki et al.   Nature Protocols

TRPA channels distinguish gravity sensing from hearing in Johnston's organ

(2009) Y. Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Live Imaging of Neuronal Degradation by Microglia Reveals a Role for v0-ATPase a1 in Phagosomal Fusion In Vivo

(2008) Francesca Peri et al.   CELL

Why do patients with PSP fall?: Evidence for abnormal otolith responses

(2008) K. Liao et al.   NEUROLOGY

Genetic analysis of crawling and swimming locomotory patterns in C. elegans

(2008) J. T. Pierce-Shimomura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dimensionality and Dynamics in the Behavior of C. elegans

(2008) Greg J. Stephens et al.   PLoS Computational Biology