Multi-animal pose estimation, identification and tracking with DeepLabCut

Perspectives on Individual Animal Identification from Biology and Computer Vision

(2021) Maxime Vidal et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

The Mouse Action Recognition System (MARS) software pipeline for automated analysis of social behaviors in mice

(2021) Cristina Segalin et al.   eLife

A Primer on Motion Capture with Deep Learning: Principles, Pitfalls, and Perspectives

(2020) Alexander Mathis et al.   NEURON

Real-time, low-latency closed-loop feedback using markerless posture tracking

(2020) Gary A Kane et al.   eLife

idtracker.ai: tracking all individuals in small or large collectives of unmarked animals

(2019) Francisco Romero-Ferrero et al.   NATURE METHODS

Using DeepLabCut for 3D markerless pose estimation across species and behaviors

(2019) Tanmay Nath et al.   Nature Protocols

Chimpanzee face recognition from videos in the wild using deep learning

(2019) Daniel Schofield et al.   Science Advances

Computational Neuroethology: A Call to Action

(2019) Sandeep Robert Datta et al.   NEURON

Deep learning tools for the measurement of animal behavior in neuroscience

(2019) Mackenzie Weygandt Mathis et al.   CURRENT OPINION IN NEUROBIOLOGY

Functional circuit architecture underlying parental behaviour

(2018) Johannes Kohl et al.   NATURE

Automatically identifying, counting, and describing wild animals in camera-trap images with deep learning

(2018) Mohammad Sadegh Norouzzadeh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DeepLabCut: markerless pose estimation of user-defined body parts with deep learning

(2018) Alexander Mathis et al.   NATURE NEUROSCIENCE

Batoid locomotion: effects of speed on pectoral fin deformation in the little skate,Leucoraja erinacea

(2016) Valentina Di Santo et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Terrestrial animal tracking as an eye on life and planet

(2015) R. Kays et al.   SCIENCE

Galanin neurons in the medial preoptic area govern parental behaviour

(2014) Zheng Wu et al.   NATURE

Articulated Human Detection with Flexible Mixtures of Parts

(2012) Yi Yang et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

Model order determination using the Hankel matrix of impulse responses

(2011) Huanhuan Yin et al.   APPLIED MATHEMATICS LETTERS

Miniaturized integration of a fluorescence microscope

(2011) Kunal K Ghosh et al.   NATURE METHODS

Evaluating Multiple Object Tracking Performance: The CLEAR MOT Metrics

(2008) Keni Bernardin et al.   European Association for Speech Signal and Image Processing