Physcomitrium patens PpRIC, an ancestral CRIB-domain ROP effector, inhibits auxin-induced differentiation of apical initial cells

A fundamental developmental transition in Physcomitrium patens is regulated by evolutionarily conserved mechanisms

(2021) Richard Jaeger et al.   EVOLUTION & DEVELOPMENT

Large-scale phylogenomic analyses reveal the monophyly of bryophytes and Neoproterozoic origin of land plants

(2021) Danyan Su et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reproductive innovations and pulsed rise in plant complexity

(2021) Andrew B. Leslie et al.   SCIENCE

Rates and patterns of molecular evolution in bryophyte genomes, with focus on complex thalloid liverworts, Marchantiopsida

(2021) Anna-Malin Linde et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Characterisation of rapid alkalinisation factors in Physcomitrium patens reveals functional conservation in tip growth

(2021) Eggie Febrianto Ginanjar et al.   NEW PHYTOLOGIST

Database resources of the national center for biotechnology information

(2021) Eric W Sayers et al.   NUCLEIC ACIDS RESEARCH

The RALF1–FERONIA Complex Phosphorylates eIF4E1 to Promote Protein Synthesis and Polar Root Hair Growth

(2020) Sirui Zhu et al.   Molecular Plant

The Small GTPase Superfamily in Plants: A Conserved Regulatory Module with Novel Functions

(2020) Erik Nielsen   Annual Review of Plant Biology

Phylogenomic Evidence for the Monophyly of Bryophytes and the Reductive Evolution of Stomata

(2020) Brogan J. Harris et al.   CURRENT BIOLOGY

Rho of Plants GTPases and Cytoskeletal Elements Control Nuclear Positioning and Asymmetric Cell Division during Physcomitrella patens Branching

(2020) Peishan Yi et al.   CURRENT BIOLOGY

The Moss Physcomitrium (Physcomitrella) patens: A Model Organism for Non-Seed Plants

(2020) Stefan A. Rensing et al.   PLANT CELL

Quantitative structural organization of bulk apical membrane traffic in pollen tubes

(2020) Gleb Grebnev et al.   PLANT PHYSIOLOGY

Opposing roles of hematopoietic-specific small GTPase Rac2 and the guanine nucleotide exchange factor Vav1 in osteoclast differentiation

(2020) In Soon Kang et al.   Scientific Reports

Auxin-induced signaling protein nanoclustering contributes to cell polarity formation

(2020) Xue Pan et al.   Nature Communications

A Fully Functional ROP Fluorescent Fusion Protein Reveals Roles for this GTPase in Subcellular and Tissue-level Patterning

(2020) Xiaohang Cheng et al.   PLANT CELL

A Rho-actin signaling pathway shapes cell wall boundaries in Arabidopsis xylem vessels

(2019) Yuki Sugiyama et al.   Nature Communications

Analysis of the Localization of Fluorescent PpROP1 and PpROP-GEF4 Fusion Proteins in Moss Protonemata Based on Genomic “Knock-In” and Estradiol-Titratable Expression

(2019) Aude Le Bail et al.   Frontiers in Plant Science

Minimal Auxin Sensing Levels In Vegetative Moss Stem Cells Revealed By A Ratiometric Reporter

(2019) Mattias Thelander et al.   NEW PHYTOLOGIST

Signaling in Pollen Tube Growth: Beyond the Tip of the Polarity Iceberg

(2019) Nolan Scheible et al.   Plants-Basel

Genomes of Subaerial Zygnematophyceae Provide Insights into Land Plant Evolution

(2019) Shifeng Cheng et al.   CELL

One thousand plant transcriptomes and the phylogenomics of green plants

(2019)   NATURE

PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens

(2019) Noe Fernandez‐Pozo et al.   PLANT JOURNAL

Plant Evolution: Phylogenetic Relationships between the Earliest Land Plants

(2018) Stefan A. Rensing   CURRENT BIOLOGY

The Interrelationships of Land Plants and the Nature of the Ancestral Embryophyte

(2018) Mark N. Puttick et al.   CURRENT BIOLOGY

Outer, inner and planar polarity in the Arabidopsis root

(2018) Moritaka Nakamura et al.   CURRENT OPINION IN PLANT BIOLOGY

The gymnosperm ortholog of the angiosperm central cell-specification gene CKI1 provides an essential clue to endosperm origin

(2018) Li Yuan et al.   NEW PHYTOLOGIST

CRISPOR: intuitive guide selection for CRISPR/Cas9 genome editing experiments and screens

(2018) Jean-Paul Concordet et al.   NUCLEIC ACIDS RESEARCH

The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data

(2018) Pierre-François Perroud et al.   PLANT JOURNAL

Systematic survey of the function of ROP regulators and effectors during tip growth in the moss Physcomitrella patens

(2018) Carlisle Bascom et al.   JOURNAL OF EXPERIMENTAL BOTANY

SMS: Smart Model Selection in PhyML

(2017) Vincent Lefort et al.   MOLECULAR BIOLOGY AND EVOLUTION

ROP GTPases Structure-Function and Signaling Pathways

(2017) Gil Feiguelman et al.   PLANT PHYSIOLOGY

A Transcriptome Atlas of Physcomitrella patens Provides Insights into the Evolution and Development of Land Plants

(2016) Carlos Ortiz-Ramírez et al.   Molecular Plant

Regulating Rho GTPases and their regulators

(2016) Richard G. Hodge et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

CRISPR-Cas9-mediated efficient directed mutagenesis and RAD51-dependent and RAD51-independent gene targeting in the mossPhyscomitrella patens

(2016) Cécile Collonnier et al.   PLANT BIOTECHNOLOGY JOURNAL

Why Plants Were Terrestrial from the Beginning

(2016) Jesper Harholt et al.   TRENDS IN PLANT SCIENCE

Constitutive auxin response in Physcomitrella reveals complex interactions between Aux/IAA and ARF proteins

(2016) Meirav Lavy et al.   eLife

The arabidopsis information resource: Making and mining the “gold standard” annotated reference plant genome

(2015) Tanya Z. Berardini et al.   GENESIS

The ROP2-RIC7 pathway negatively regulates light-induced stomatal opening by inhibiting exocyst subunit Exo70B1 in Arabidopsis

(2015) Daewoong Hong et al.   NEW PHYTOLOGIST

Arabidopsis RIC1 Severs Actin Filaments at the Apex to Regulate Pollen Tube Growth

(2015) Zhenzhen Zhou et al.   PLANT CELL

A novel gateway-compatible binary vector series (PC-GW) for flexible cloning of multiple genes for genetic transformation of plants

(2015) Jyoti Dalal et al.   PLASMID

Principles of protein targeting to the nucleolus

(2015) Robert M Martin et al.   Nucleus

Principles of protein targeting to the nucleolus

(2015) Robert M Martin et al.   Nucleus

Directional Auxin Transport Mechanisms in Early Diverging Land Plants

(2014) Tom Viaene et al.   CURRENT BIOLOGY

Diversity and specificity: auxin perception and signaling through the TIR1/AFB pathway

(2014) Renhou Wang et al.   CURRENT OPINION IN PLANT BIOLOGY

PLAZA 3.0: an access point for plant comparative genomics

(2014) Sebastian Proost et al.   NUCLEIC ACIDS RESEARCH

RISAP Is a TGN-Associated RAC5 Effector Regulating Membrane Traffic during Polar Cell Growth in Tobacco

(2014) Octavian Stephan et al.   PLANT CELL

Rho family GTPase-dependent immunity in plants and animals

(2014) Yoji Kawano et al.   Frontiers in Plant Science

Regulation of Small GTPases by GEFs, GAPs, and GDIs

(2013) Jacqueline Cherfils et al.   PHYSIOLOGICAL REVIEWS

System for Stable β-Estradiol-Inducible Gene Expression in the Moss Physcomitrella patens

(2013) Minoru Kubo et al.   PLoS One

Evaluation of Reference Genes for RT qPCR Analyses of Structure-Specific and Hormone Regulated Gene Expression in Physcomitrella patens Gametophytes

(2013) Aude Le Bail et al.   PLoS One

Recruitment and remodeling of an ancient gene regulatory network during land plant evolution

(2013) Nuno D. Pires et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ABP1 and ROP6 GTPase Signaling Regulate Clathrin-Mediated Endocytosis in Arabidopsis Roots

(2012) Xu Chen et al.   CURRENT BIOLOGY

A ROP GTPase-Dependent Auxin Signaling Pathway Regulates the Subcellular Distribution of PIN2 in Arabidopsis Roots

(2012) Deshu Lin et al.   CURRENT BIOLOGY

The cyclophilin DIAGEOTROPICA has a conserved role in auxin signaling

(2012) M. Lavy et al.   DEVELOPMENT

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

The evolution of reproductive structures in seed plants: a re-examination based on insights from developmental genetics

(2012) Sarah Mathews et al.   NEW PHYTOLOGIST

New insights into Rho signaling from plant ROP/Rac GTPases

(2012) Christian Craddock et al.   TRENDS IN CELL BIOLOGY

ROP GTPase-Dependent Actin Microfilaments Promote PIN1 Polarization by Localized Inhibition of Clathrin-Dependent Endocytosis

(2012) Shingo Nagawa et al.   PLOS BIOLOGY

RSL genes are sufficient for rhizoid system development in early diverging land plants

(2011) G. Jang et al.   DEVELOPMENT

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

An experimental method to facilitate the identification of hybrid sporophytes in the moss Physcomitrella patens using fluorescent tagged lines

(2011) Pierre-François Perroud et al.   NEW PHYTOLOGIST

Auxin promotes the transition from chloronema to caulonema in moss protonema by positively regulating PpRSL1and PpRSL2 in Physcomitrella patens

(2011) Geupil Jang et al.   NEW PHYTOLOGIST

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

The Genome Portal of the Department of Energy Joint Genome Institute

(2011) I. V. Grigoriev et al.   NUCLEIC ACIDS RESEARCH

Rapid tip growth: Insights from pollen tubes

(2011) Yuan Qin et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Cell Surface- and Rho GTPase-Based Auxin Signaling Controls Cellular Interdigitation in Arabidopsis

(2010) Tongda Xu et al.   CELL

Homologues of the Arabidopsis thaliana SHI/STY/LRP1 genes control auxin biosynthesis and affect growth and development in the moss Physcomitrella patens

(2010) D. M. Eklund et al.   DEVELOPMENT

Physcomitrella patens: a model to investigate the role of RAC/ROP GTPase signalling in tip growth

(2010) D. Magnus Eklund et al.   JOURNAL OF EXPERIMENTAL BOTANY

FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development

(2010) Qiaohong Duan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction

(2009) Alex N Nguyen Ba et al.   BMC BIOINFORMATICS

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

A polycomb repressive complex 2 gene regulates apogamy and gives evolutionary insights into early land plant evolution

(2009) Y. Okano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Barley RIC171 interacts with RACBin plantaand supports entry of the powdery mildew fungus

(2008) Holger Schultheiss et al.   CELLULAR MICROBIOLOGY

RIP1 (ROP Interactive Partner 1)/ICR1 Marks Pollen Germination Sites and May Act in the ROP1 Pathway in the Control of Polarized Pollen Growth

(2008) Shundai Li et al.   Molecular Plant

Moss (Physcomitrella patens ) GH3 proteins act in auxin homeostasis

(2008) Jutta Ludwig-Müller et al.   NEW PHYTOLOGIST

The Arabidopsis Small G Protein ROP2 Is Activated by Light in Guard Cells and Inhibits Light-Induced Stomatal Opening

(2008) B. W. Jeon et al.   PLANT CELL

Kinesins Are Indispensable for Interdigitation of Phragmoplast Microtubules in the Moss Physcomitrella patens

(2008) Y. Hiwatashi et al.   PLANT CELL

Requirement of B2-Type Cyclin-Dependent Kinases for Meristem Integrity in Arabidopsis thaliana

(2008) S. U. Andersen et al.   PLANT CELL

Spatial control of Rho (Rac-Rop) signaling in tip-growing plant cells

(2008) Benedikt Kost   TRENDS IN CELL BIOLOGY

The knock-out of ARP3a gene affects F-actin cytoskeleton organization altering cellular tip growth, morphology and development in mossPhyscomitrella patens

(2008) Andrija Finka et al.   CELL MOTILITY AND THE CYTOSKELETON