Comparative transcriptome analysis reveals the phosphate starvation alleviation mechanism of phosphate accumulating Pseudomonas putida in Arabidopsis thaliana

Functional Genetic Diversity and Plant Growth Promoting Potential of Polyphosphate Accumulating Bacteria in Soil

(2022) Sonal Srivastava et al.   Microbiology Spectrum

Prescience of endogenous regulation in Arabidopsis thaliana by Pseudomonas putida MTCC 5279 under phosphate starved salinity stress condition

(2020) Sonal Srivastava et al.   Scientific Reports

High-Throughput Sequencing and Expression Analysis Suggest the Involvement of Pseudomonas putida RA-Responsive microRNAs in Growth and Development of Arabidopsis

(2020) Ram Jatan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Overexpression of the trehalose-6-phosphate phosphatase family gene AtTPPF improves the drought tolerance of Arabidopsis thaliana

(2019) Qingfang Lin et al.   BMC PLANT BIOLOGY

Transcriptional alterations reveal Bacillus amyloliquefaciens-rice cooperation under salt stress

(2019) Puneet Singh Chauhan et al.   Scientific Reports

Nitrate‐inducible NIGT1 proteins modulate phosphate uptake and starvation signalling via transcriptional regulation of SPX genes

(2019) Yoshiaki Ueda et al.   PLANT JOURNAL

The impacts of phosphorus deficiency on the photosynthetic electron transport chain

(2018) Andreas Carstensen et al.   PLANT PHYSIOLOGY

A NIGT1-centred transcriptional cascade regulates nitrate signalling and incorporates phosphorus starvation signals in Arabidopsis

(2018) Yoshie Maeda et al.   Nature Communications

Abscisic Acid and Gibberellins Antagonistically Mediate Plant Development and Abiotic Stress Responses

(2018) Kai Shu et al.   Frontiers in Plant Science

Sensing and Signaling of Phosphate Starvation: From Local to Long Distance

(2018) Pei-Shan Chien et al.   PLANT AND CELL PHYSIOLOGY

Overexpression of a Phosphate Starvation Response AP2/ERF Gene From Physic Nut in Arabidopsis Alters Root Morphological Traits and Phosphate Starvation-Induced Anthocyanin Accumulation

(2018) Yanbo Chen et al.   Frontiers in Plant Science

CC-type glutaredoxins mediate plant response and signaling under nitrate starvation in Arabidopsis

(2018) Ji-Yul Jung et al.   BMC PLANT BIOLOGY

Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation

(2017) Dávid Aleksza et al.   PLANT PHYSIOLOGY

Possible Interactions between the Biosynthetic Pathways of Indole Glucosinolate and Auxin

(2017) Siva K. Malka et al.   Frontiers in Plant Science

Effects of Combined Low Glutathione with Mild Oxidative and Low Phosphorus Stress on the Metabolism of Arabidopsis thaliana

(2017) Atsushi Fukushima et al.   Frontiers in Plant Science

Ethylene Role in Plant Growth, Development and Senescence: Interaction with Other Phytohormones

(2017) Noushina Iqbal et al.   Frontiers in Plant Science

Root Endophyte Colletotrichum tofieldiae Confers Plant Fitness Benefits that Are Phosphate Status Dependent

(2016) Kei Hiruma et al.   CELL

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Identification of plant vacuolar transporters mediating phosphate storage

(2016) Tzu-Yin Liu et al.   Nature Communications

The Molecular Mechanism of Ethylene-Mediated Root Hair Development Induced by Phosphate Starvation

(2016) Li Song et al.   PLoS Genetics

OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice

(2015) Xiaoyan Dai et al.   JOURNAL OF EXPERIMENTAL BOTANY

SAUR Proteins as Effectors of Hormonal and Environmental Signals in Plant Growth

(2015) Hong Ren et al.   Molecular Plant

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Identification of primary and secondary metabolites with phosphorus status-dependent abundance inArabidopsis, and of the transcription factor PHR1 as a major regulator of metabolic changes during phosphorus limitation

(2014) BIKRAM-DATT PANT et al.   PLANT CELL AND ENVIRONMENT

Plant Nutrition: Root Transporters on the Move

(2014) E. Zelazny et al.   PLANT PHYSIOLOGY

ETHYLENE RESPONSE FACTOR070 Regulates Root Development and Phosphate Starvation-Mediated Responses

(2014) M. Ramaiah et al.   PLANT PHYSIOLOGY

A Shoot-Specific Hypoxic Response of Arabidopsis Sheds Light on the Role of the Phosphate-Responsive Transcription Factor PHOSPHATE STARVATION RESPONSE1

(2014) M. Klecker et al.   PLANT PHYSIOLOGY

Arabidopsis WRKY45 Transcription Factor Activates PHOSPHATE TRANSPORTER1;1 Expression in Response to Phosphate Starvation

(2014) H. Wang et al.   PLANT PHYSIOLOGY

Functional insights of nucleocytoplasmic transport in plants

(2014) Kentaro Tamura et al.   Frontiers in Plant Science

The Plant Vascular System: Evolution, Development and FunctionsF

(2013) William J. Lucas et al.   Journal of Integrative Plant Biology

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

RNA-Seq analysis in MeV

(2011) E. A. Howe et al.   BIOINFORMATICS

A high throughput method and culture medium for rapid screening of phosphate accumulating microorganisms

(2011) Vasvi Chaudhry et al.   BIORESOURCE TECHNOLOGY

Expression patterns of nitrate, phosphate, and sulfate transporters in Arabidopsis roots exposed to different nutritional regimes

(2011) Shengjie Bao et al.   Botany

Metabolic Adaptations of Phosphate-Starved Plants

(2011) W. C. Plaxton et al.   PLANT PHYSIOLOGY

Soil Microorganisms Mediating Phosphorus Availability Update on Microbial Phosphorus

(2011) A. E. Richardson et al.   PLANT PHYSIOLOGY

Root developmental adaptation to phosphate starvation: better safe than sorry

(2011) Benjamin Péret et al.   TRENDS IN PLANT SCIENCE

Effect of plant growth promoting Pseudomonas spp. on compatible solutes, antioxidant status and plant growth of maize under drought stress

(2010) V. Sandhya et al.   PLANT GROWTH REGULATION

Assessing turnover of microbial biomass phosphorus: Combination of an isotopic dilution method with a mass balance model

(2010) David L. Achat et al.   SOIL BIOLOGY & BIOCHEMISTRY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

OverexpressingHRS1Confers Hypersensitivity to Low Phosphate-Elicited Inhibition of Primary Root Growth inArabidopsis thaliana

(2009) Hong Liu et al.   Journal of Integrative Plant Biology

Microbial responses to P addition in six South African forest soils

(2009) Camilla Esberg et al.   PLANT AND SOIL