Polymerase Synthesis and Restriction Enzyme Cleavage of DNA Containing 7-Substituted 7-Deazaguanine Nucleobases

Fluorescence Quenching in Oligonucleotides Containing 7-Substituted 7-Deazaguanine Bases Prepared by the Nicking Enzyme Amplification Reaction

(2015) Petra Ménová et al.   BIOCONJUGATE CHEMISTRY

DNA polymerase-catalyzed incorporation of nucleotides modified with a G-quadruplex-derived DNAzyme

(2015) D. Verga et al.   CHEMICAL COMMUNICATIONS

Polymerase synthesis of DNA labelled with benzylidene cyanoacetamide-based fluorescent molecular rotors: fluorescent light-up probes for DNA-binding proteins

(2015) Dmytro Dziuba et al.   CHEMICAL COMMUNICATIONS

Azidophenyl as a click-transformable redox label of DNA suitable for electrochemical detection of DNA–protein interactions

(2015) Jana Balintová et al.   Chemical Science

Polymerase Synthesis of Photocaged DNA Resistant against Cleavage by Restriction Endonucleases

(2014) Zuzana Vaníková et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

7-Aryl-7-deazaadenine 2′-Deoxyribonucleoside Triphosphates (dNTPs): Better Substrates for DNA Polymerases than dATP in Competitive Incorporations

(2014) Pavel Kielkowski et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Polymerase Synthesis of DNAs Bearing Vinyl Groups in the Major Groove and their Cleavage by Restriction Endonucleases

(2014) Michaela Mačková et al.   CHEMBIOCHEM

Synthesis of Base-Modified 2′-Deoxyribonucleoside Triphosphates and Their Use in Enzymatic Synthesis of Modified DNA for Applications in Bioanalysis and Chemical Biology

(2014) Michal Hocek   JOURNAL OF ORGANIC CHEMISTRY

Vinylsulfonamide and Acrylamide Modification of DNA for Cross-linking with Proteins

(2013) Jitka Dadová et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Scope and Limitations of the Nicking Enzyme Amplification Reaction for the Synthesis of Base-Modified Oligonucleotides and Primers for PCR

(2013) Petra Ménová et al.   BIOCONJUGATE CHEMISTRY

Facile protection-free one-pot synthesis of 7-deaza-2′-deoxyguanosine-5′-triphosphate — A versatile molecular biology probe

(2013) Anilkumar R. Kore et al.   CANADIAN JOURNAL OF CHEMISTRY

Nucleobase Protection Strategy for Gene Cloning and Expression

(2013) Pavel Kielkowski et al.   CHEMBIOCHEM

Structures of KOD and 9°N DNA Polymerases Complexed with Primer Template Duplex

(2013) Konrad Bergen et al.   CHEMBIOCHEM

Benzofurazane as a New Redox Label for Electrochemical Detection of DNA: Towards Multipotential Redox Coding of DNA Bases

(2013) Jana Balintová et al.   CHEMISTRY-A EUROPEAN JOURNAL

Ethynyl Side Chain Hydration during Synthesis and Workup of “Clickable” Oligonucleotides: Bypassing Acetyl Group Formation by Triisopropylsilyl Protection

(2013) Sachin A. Ingale et al.   JOURNAL OF ORGANIC CHEMISTRY

Efficacy of Base-Modification on Target Binding of Small Molecule DNA Aptamers

(2013) Yuri Imaizumi et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Snapshot of a DNA Polymerase while Incorporating Two Consecutive C5-Modified Nucleotides

(2013) Samra Obeid et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Nucleoside and oligonucleotide pyrene conjugates with 1,2,3-triazolyl or ethynyl linkers: synthesis, duplex stability, and fluorescence changes generated by the DNA-dye connector

(2013) Sachin A. Ingale et al.   TETRAHEDRON

Toward the Combinatorial Selection of Chemically Modified DNAzyme RNase A Mimics Active Against all-RNA Substrates

(2013) Marcel Hollenstein et al.   ACS Combinatorial Science

Interactions of non-polar and “Click-able” nucleotides in the confines of a DNA polymerase active site

(2012) Samra Obeid et al.   CHEMICAL COMMUNICATIONS

Synthesis of Aldehyde-Linked Nucleotides and DNA and Their Bioconjugations with Lysine and Peptides through Reductive Amination

(2012) Veronika Raindlová et al.   CHEMISTRY-A EUROPEAN JOURNAL

GFP-like Fluorophores as DNA Labels for Studying DNA–Protein Interactions

(2012) Jan Riedl et al.   JOURNAL OF ORGANIC CHEMISTRY

Structures of KlenTaq DNA Polymerase Caught While Incorporating C5-Modified Pyrimidine and C7-Modified 7-Deazapurine Nucleoside Triphosphates

(2012) Konrad Bergen et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Nucleoside Triphosphates — Building Blocks for the Modification of Nucleic Acids

(2012) Marcel Hollenstein   MOLECULES

Labelling of nucleosides and oligonucleotides by solvatochromic 4-aminophthalimide fluorophore for studying DNA–protein interactions

(2012) Jan Riedl et al.   Chemical Science

Transient and Switchable (Triethylsilyl)ethynyl Protection of DNA against Cleavage by Restriction Endonucleases

(2011) Pavel Kielkowski et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Barcoded Nucleotides

(2011) Anna Baccaro et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Cleavage of Functionalized DNA Containing 5-Modified Pyrimidines by Type II Restriction Endonucleases

(2011) Hana Macíčková-Cahová et al.   CHEMBIOCHEM

Nucleobase modification as redox DNA labelling for electrochemical detection

(2011) Michal Hocek et al.   CHEMICAL SOCIETY REVIEWS

Tail-labelling of DNA probes using modified deoxynucleotide triphosphates and terminal deoxynucleotidyl tranferase. Application in electrochemical DNA hybridization and protein-DNA binding assays

(2011) Petra Horáková et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Direct Voltammetric Analysis of DNA Modified with Enzymatically Incorporated 7-Deazapurines

(2010) Hana Pivoňková et al.   ANALYTICAL CHEMISTRY

Structures of DNA Polymerases Caught Processing Size-Augmented Nucleotide Probes

(2010) Karin Betz et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Structural basis for the synthesis of nucleobase modified DNA by Thermus aquaticus DNA polymerase

(2010) S. Obeid et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enzymatic Synthesis of Organic-Polymer-Grafted DNA

(2009) Anna Baccaro et al.   CHEMISTRY-A EUROPEAN JOURNAL

Investigation of the Catalytic Mechanism of a Synthetic DNAzyme with Protein-like Functionality: An RNaseA Mimic?

(2009) Jason M. Thomas et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Cleavage of adenine-modified functionalized DNA by type II restriction endonucleases

(2009) Hana Macíčková-Cahová et al.   NUCLEIC ACIDS RESEARCH

Click–Click–Click: Single to Triple Modification of DNA

(2008) Philipp M. E. Gramlich et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Postsynthetic DNA Modification through the Copper-Catalyzed Azide-Alkyne Cycloaddition Reaction

(2008) Philipp M. E. Gramlich et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Pyrrolo-dC oligonucleotides bearing alkynyl side chains with terminal triple bonds: synthesis, base pairing and fluorescent dye conjugates prepared by the azide–alkyne “click” reaction

(2008) Frank Seela et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Modification of DNA with Octadiynyl Side Chains: Synthesis, Base Pairing, and Formation of Fluorescent Coumarin Dye Conjugates of Four Nucleobases by the Alkyne−Azide “Click” Reaction

(2007) Frank Seela et al.   BIOCONJUGATE CHEMISTRY