The unmarked R package: Twelve years of advances in occurrence and abundance modelling in ecology

The unmarked R package: Twelve years of advances in occurrence and abundance modelling in ecology

(2023) Kenneth F. Kellner et al.   Methods in Ecology and Evolution

spOccupancy: An R package for single‐species, multi‐species, and integrated spatial occupancy models

(2022) Jeffrey W. Doser et al.   Methods in Ecology and Evolution

ubms: An R package for fitting hierarchical occupancy and N‐mixture abundance models in a Bayesian framework

(2021) Kenneth F. Kellner et al.   Methods in Ecology and Evolution

Acoustic localization of terrestrial wildlife: Current practices and future opportunities

(2020) Tessa A. Rhinehart et al.   Ecology and Evolution

Machine learning to classify animal species in camera trap images: Applications in ecology

(2018) Michael A. Tabak et al.   Methods in Ecology and Evolution

Programming With Models: Writing Statistical Algorithms for General Model Structures With NIMBLE

(2017) Perry de Valpine et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

Stan: A Probabilistic Programming Language

(2017) Bob Carpenter et al.   Journal of Statistical Software

TMB: Automatic Differentiation and Laplace Approximation

(2016) Kasper Kristensen et al.   Journal of Statistical Software

A multispecies occupancy model for two or more interacting species

(2016) Christopher T. Rota et al.   Methods in Ecology and Evolution

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

unmarked: AnRPackage for Fitting Hierarchical Models of Wildlife Occurrence and Abundance

(2015) Ian Fiske et al.   Journal of Statistical Software

Rcpp: SeamlessRandC++Integration

(2015) Dirk Eddelbuettel et al.   Journal of Statistical Software

A hierarchical model combining distance sampling and time removal to estimate detection probability during avian point counts

(2014) Courtney L. Amundson et al.   AUK

Hierarchical distance-sampling models to estimate population size and habitat-specific abundance of an island endemic

(2012) T. Scott Sillett et al.   ECOLOGICAL APPLICATIONS

Models for Estimating Abundance from Repeated Counts of an Open Metapopulation

(2010) D. Dail et al.   BIOMETRICS

Species Distribution Models: Ecological Explanation and Prediction Across Space and Time

(2009) Jane Elith et al.   Annual Review of Ecology Evolution and Systematics

Modeling species occurrence dynamics with multiple states and imperfect detection

(2009) Darryl I. MacKenzie et al.   ECOLOGY

Distance software: design and analysis of distance sampling surveys for estimating population size

(2009) Len Thomas et al.   JOURNAL OF APPLIED ECOLOGY

A protocol for data exploration to avoid common statistical problems

(2009) Alain F. Zuur et al.   Methods in Ecology and Evolution

Imperfect detection and its consequences for monitoring for conservation

(2008) M. Kéry et al.   COMMUNITY ECOLOGY