Legume‐wide comparative analysis of pod shatter locus PDH1 reveals phaseoloid specificity, high cowpea expression, and stress responsive genomic context

Development and Validation of SNP and InDel Markers for Pod-Shattering Tolerance in Soybean

(2022) Jeong-Hyun Seo et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

SCARECROW is deployed in distinct contexts during rice and maize leaf development

(2022) Thomas E. Hughes et al.   DEVELOPMENT

Loss of pod strings in common bean is associated with gene duplication, retrotransposon insertion and overexpression of PvIND

(2022) Travis A. Parker et al.   NEW PHYTOLOGIST

clinker & clustermap.js: automatic generation of gene cluster comparison figures

(2021) Cameron L M Gilchrist et al.   BIOINFORMATICS

Comprehensive genomic resources related to domestication and crop improvement traits in Lima bean

(2021) Tatiana Garcia et al.   Nature Communications

Genetic, anatomical, and environmental patterns related to pod shattering resistance in domesticated cowpea (Vigna unguiculata [L.] Walp)

(2021) Sassoum Lo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mungbean DIRIGENT Gene Subfamilies and Their Expression Profiles Under Salt and Drought Stresses

(2021) Wenying Xu et al.   Frontiers in Genetics

Genome-Wide Identification Reveals the Potential Functions of the bZIP Gene Family in Common Bean (Phaseolus vulgaris) in Response to Salt Stress During the Sprouting Stage

(2021) Qi Zhang et al.   JOURNAL OF PLANT GROWTH REGULATION

PuC3H35 confers drought tolerance by enhancing lignin and proanthocyanidin biosynthesis in the roots of Populus ussuriensis

(2021) Dandan Li et al.   NEW PHYTOLOGIST

The C2H2-type zinc finger transcription factor MdZAT10 negatively regulates drought tolerance in apple

(2021) Kuo Yang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement

(2021) Vanika Garg et al.   Journal of Advanced Research

High-quality genome sequence of white lupin provides insight into soil exploration and seed quality

(2020) Bárbara Hufnagel et al.   Nature Communications

Genetic analysis reveals PDH1 as a candidate gene for control of pod dehiscence in chickpea

(2020) David Aguilar-Benitez et al.   MOLECULAR BREEDING

Same Locus for Non-shattering Seed Pod in Two Independently Domesticated Legumes, Vigna angularis and Vigna unguiculata

(2020) Yu Takahashi et al.   Frontiers in Genetics

First approach to pod dehiscence in faba bean: genetic and histological analyses

(2020) David Aguilar-Benitez et al.   Scientific Reports

QTL Mapping and Candidate Gene Analysis for Pod Shattering Tolerance in Soybean (Glycine max)

(2020) Jeong-Hyun Seo et al.   Plants-Basel

Functional characterization of soybean (Glycine max) DIRIGENT genes reveals an important role of GmDIR27 in the regulation of pod dehiscence

(2020) Xiaofei Ma et al.   GENOMICS

Pod indehiscence in common bean is associated to the fine regulation of PvMYB26

(2020) Valerio Di Vittori et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-Wide Analysis of the GRAS Gene Family and Functional Identification of GmGRAS37 in Drought and Salt Tolerance

(2020) Ting-Ting Wang et al.   Frontiers in Plant Science

Convergent Evolution of the Seed Shattering Trait

(2019) Valerio Di Vittori et al.   Genes

A reference-grade wild soybean genome

(2019) Min Xie et al.   Nature Communications

Molecular tools for detecting Pdh1 can improve soybean breeding efficiency by reducing yield losses due to pod shatter

(2019) Carrie Miranda et al.   MOLECULAR BREEDING

The genome of cowpea ( Vigna unguiculata [L.] Walp.)

(2019) Stefano Lonardi et al.   PLANT JOURNAL

Epitranscriptomic RNA Methylation in Plant Development and Abiotic Stress Responses

(2019) Jianzhong Hu et al.   Frontiers in Plant Science

A reference genome for pea provides insight into legume genome evolution

(2019) Jonathan Kreplak et al.   NATURE GENETICS

Pod indehiscence is a domestication and aridity resilience trait in common bean

(2019) Travis A. Parker et al.   NEW PHYTOLOGIST

Construction and comparison of three reference‐quality genome assemblies for soybean

(2019) Babu Valliyodan et al.   PLANT JOURNAL

HVA22 from citrus: A small gene family whose some members are involved in plant response to abiotic stress

(2019) Monique Drielle Gomes Ferreira et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genetic Control and Geo-Climate Adaptation of Pod Dehiscence Provide Novel Insights into Soybean Domestication

(2019) Jiaoping Zhang et al.   G3-Genes Genomes Genetics

Identification of QTL controlling domestication-related traits in cowpea (Vigna unguiculata L. Walp)

(2018) Sassoum Lo et al.   Scientific Reports

Genome-Wide Identification and Classification of Soybean C2H2 Zinc Finger Proteins and Their Expression Analysis in Legume-Rhizobium Symbiosis

(2018) Songli Yuan et al.   Frontiers in Microbiology

Global Methylome and gene expression analysis during early Peanut pod development

(2018) Pengfei Wang et al.   BMC PLANT BIOLOGY

Genomic dissection of pod shattering in common bean: mutations at non-orthologous loci at the basis of convergent phenotypic evolution under domestication of leguminous species

(2018) Domenico Rau et al.   PLANT JOURNAL

Dirigent proteins in plants: modulating cell wall metabolism during abiotic and biotic stress exposure

(2017) Candelas Paniagua et al.   JOURNAL OF EXPERIMENTAL BOTANY

Similarity between soybean andArabidopsisseed methylomes and loss of non-CG methylation does not affect seed development

(2017) Jer-Young Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide analysis and expression profiling of PP2C clade D under saline and alkali stresses in wild soybean and Arabidopsis

(2017) Chao Chen et al.   PROTOPLASMA

A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny – The Legume Phylogeny Working Group (LPWG)

(2017) Nasim Azani et al.   TAXON

Gene Mining for Proline Based Signaling Proteins in Cell Wall of Arabidopsis thaliana

(2017) Muhammad Z. Ihsan et al.   Frontiers in Plant Science

A Comprehensive Phenotypic Investigation of the “Pod-Shattering Syndrome” in Common Bean

(2017) Maria L. Murgia et al.   Frontiers in Plant Science

Expression Differences of Pigment Structural Genes and Transcription Factors Explain Flesh Coloration in Three Contrasting Kiwifruit Cultivars

(2017) Yanfei Liu et al.   Frontiers in Plant Science

BnLATE, a Cys2/His2-Type Zinc-Finger Protein, Enhances Silique Shattering Resistance by Negatively Regulating Lignin Accumulation in the Silique Walls of Brassica napus

(2017) Zhangsheng Tao et al.   PLoS One

Co-localization of QTLs for pod fiber content and pod shattering in F2 and backcross populations between yardlong bean and wild cowpea

(2016) Wipawan Suanum et al.   MOLECULAR BREEDING

TheVigna unguiculataGene Expression Atlas (VuGEA) fromde novoassembly and quantification of RNA-seq data provides insights into seed maturation mechanisms

(2016) Shaolun Yao et al.   PLANT JOURNAL

ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data

(2016) Guangchuang Yu et al.   Methods in Ecology and Evolution

A Novel FC116/BC10 Mutation Distinctively Causes Alteration in the Expression of the Genes for Cell Wall Polymer Synthesis in Rice

(2016) Mingliang Zhang et al.   Frontiers in Plant Science

SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation

(2016) Wei Shen et al.   PLoS One

Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication

(2015) Kai Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SCARECROW-LIKE15 interacts with HISTONE DEACETYLASE19 and is essential for repressing the seed maturation programme

(2015) Ming-Jun Gao et al.   Nature Communications

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Molecular basis of a shattering resistance boosting global dissemination of soybean

(2014) Hideyuki Funatsuki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome sequence of mungbean and insights into evolution within Vigna species

(2014) Yang Jae Kang et al.   Nature Communications

Pod shattering resistance associated with domestication is mediated by a NAC gene in soybean

(2014) Yang Dong et al.   Nature Communications

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

(2013) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

A novel hybrid gene prediction method employing protein multiple sequence alignments

(2011) Oliver Keller et al.   BIOINFORMATICS

Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers

(2011) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Non-redundant functions of two proline dehydrogenase isoforms in Arabidopsis

(2010) Dietmar Funck et al.   BMC PLANT BIOLOGY

Abiotic and Biotic Stresses and Changes in the Lignin Content and Composition in Plants

(2010) Jullyana Cristina Magalhães Silva Moura et al.   Journal of Integrative Plant Biology

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Rosid radiation and the rapid rise of angiosperm-dominated forests

(2009) H. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis

(2009) T. Umezawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome Structure of the Legume, Lotus japonicus

(2008) S. Sato et al.   DNA RESEARCH

An Abscisic Acid-Induced Protein, HVA22, Inhibits Gibberellin-Mediated Programmed Cell Death in Cereal Aleurone Cells

(2008) W.-J. Guo et al.   PLANT PHYSIOLOGY