Region Capture Micro-C reveals coalescence of enhancers and promoters into nested microcompartments
Published 2023 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Region Capture Micro-C reveals coalescence of enhancers and promoters into nested microcompartments
Authors
Keywords
-
Journal
NATURE GENETICS
Volume 55, Issue 6, Pages 1048-1056
Publisher
Springer Science and Business Media LLC
Online
2023-05-09
DOI
10.1038/s41588-023-01391-1
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Enhancer–promoter interactions can bypass CTCF-mediated boundaries and contribute to phenotypic robustness
- (2023) Shreeta Chakraborty et al. NATURE GENETICS
- Enhancer–promoter contact formation requires RNAPII and antagonizes loop extrusion
- (2023) Shu Zhang et al. NATURE GENETICS
- Functional organization of RNA polymerase II in nuclear subcompartments
- (2022) Karsten Rippe et al. CURRENT OPINION IN CELL BIOLOGY
- Prediction of histone post-translational modification patterns based on nascent transcription data
- (2022) Zhong Wang et al. NATURE GENETICS
- Generation of dynamic three-dimensional genome structure through phase separation of chromatin
- (2022) Shin Fujishiro et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Dynamics of CTCF- and cohesin-mediated chromatin looping revealed by live-cell imaging
- (2022) Michele Gabriele et al. SCIENCE
- Analysis of sub-kilobase chromatin topology reveals nano-scale regulatory interactions with variable dependence on cohesin and CTCF
- (2022) Abrar Aljahani et al. Nature Communications
- Cohesin-dependence of neuronal gene expression relates to chromatin loop length
- (2022) Lesly Calderon et al. eLife
- Building regulatory landscapes reveals that an enhancer can recruit cohesin to create contact domains, engage CTCF sites and activate distant genes
- (2022) Niels J. Rinzema et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Cohesin is required for long-range enhancer action at the Shh locus
- (2022) Lauren Kane et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Enhancer–promoter interactions and transcription are largely maintained upon acute loss of CTCF, cohesin, WAPL or YY1
- (2022) Tsung-Han S. Hsieh et al. NATURE GENETICS
- Defining genome architecture at base-pair resolution
- (2021) Peng Hua et al. NATURE
- Systematic evaluation of chromosome conformation capture assays
- (2021) Betul Akgol Oksuz et al. NATURE METHODS
- CoolBox: a flexible toolkit for visual analysis of genomics data
- (2021) Weize Xu et al. BMC BIOINFORMATICS
- Chromatin Hyperacetylation Impacts Chromosome Folding by Forming a Nuclear Subcompartment
- (2020) Celeste D. Rosencrance et al. MOLECULAR CELL
- Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding
- (2020) Tsung-Han S. Hsieh et al. MOLECULAR CELL
- Ultrastructural Details of Mammalian Chromosome Architecture
- (2020) Nils Krietenstein et al. MOLECULAR CELL
- Dynamics of the 4D genome during in vivo lineage specification and differentiation
- (2020) A. Marieke Oudelaar et al. Nature Communications
- Cohesin-Dependent and -Independent Mechanisms Mediate Chromosomal Contacts between Promoters and Enhancers
- (2020) Michiel J. Thiecke et al. Cell Reports
- Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution
- (2020) Qiancheng You et al. NATURE BIOTECHNOLOGY
- The relationship between genome structure and function
- (2020) A. Marieke Oudelaar et al. NATURE REVIEWS GENETICS
- The UCSC Genome Browser database: 2021 update
- (2020) Jairo Navarro Gonzalez et al. NUCLEIC ACIDS RESEARCH
- A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens
- (2019) Molly Gasperini et al. CELL
- Cooler: scalable storage for Hi-C data and other genomically labeled arrays
- (2019) Nezar Abdennur et al. BIOINFORMATICS
- A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers
- (2019) Laila El Khattabi et al. CELL
- Distinct Classes of Chromatin Loops Revealed by Deletion of an RNA-Binding Region in CTCF
- (2019) Anders S. Hansen et al. MOLECULAR CELL
- Chromatin organization by an interplay of loop extrusion and compartmental segregation
- (2018) Johannes Nuebler et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Juicebox.js Provides a Cloud-Based Visualization System for Hi-C Data
- (2018) James T. Robinson et al. Cell Systems
- Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation
- (2018) Sergi Cuartero et al. NATURE IMMUNOLOGY
- HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient
- (2017) Tao Yang et al. GENOME RESEARCH
- Two independent modes of chromatin organization revealed by cohesin removal
- (2017) Wibke Schwarzer et al. NATURE
- CTCF and cohesin regulate chromatin loop stability with distinct dynamics
- (2017) Anders S Hansen et al. eLife
- The 3D Genome as Moderator of Chromosomal Communication
- (2016) Job Dekker et al. CELL
- Formation of Chromosomal Domains by Loop Extrusion
- (2016) Geoffrey Fudenberg et al. Cell Reports
- Capture Hi-C identifies the chromatin interactome of colorectal cancer risk loci
- (2015) Roland Jäger et al. Nature Communications
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- ASox2distal enhancer cluster regulates embryonic stem cell differentiation potential
- (2014) Harry Y. Zhou et al. GENES & DEVELOPMENT
- CRISPR Reveals a Distal Super-Enhancer Required for Sox2 Expression in Mouse Embryonic Stem Cells
- (2014) Yan Li et al. PLoS One
- CrossMap: a versatile tool for coordinate conversion between genome assemblies
- (2013) Hao Zhao et al. BIOINFORMATICS
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Spatial partitioning of the regulatory landscape of the X-inactivation centre
- (2012) Elphège P. Nora et al. NATURE
- Iterative correction of Hi-C data reveals hallmarks of chromosome organization
- (2012) Maxim Imakaev et al. NATURE METHODS
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- Agouti C57BL/6N embryonic stem cells for mouse genetic resources
- (2009) Stephen J Pettitt et al. NATURE METHODS
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More