Unraveling the skatole biodegradation process in an enrichment consortium using integrated omics and culture-dependent strategies
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Title
Unraveling the skatole biodegradation process in an enrichment consortium using integrated omics and culture-dependent strategies
Authors
Keywords
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Journal
Journal of Environmental Sciences-China
Volume 127, Issue -, Pages 688-699
Publisher
Elsevier BV
Online
2022-06-29
DOI
10.1016/j.jes.2022.06.025
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- (2020) Daniel C. Volke et al. TRENDS IN MICROBIOLOGY
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- (2019) Haiyang Hu et al. mBio
- TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
- (2019) Jan P. Meier-Kolthoff et al. Nature Communications
- MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
- (2019) Dongwan D. Kang et al. PeerJ
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- (2018) Jiguo Qiu et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Biodegradation and Biotransformation of Indole: Advances and Perspectives
- (2018) Qiao Ma et al. Frontiers in Microbiology
- Unveiling the biotransformation mechanism of indole in a Cupriavidus sp. strain
- (2017) Yuanyuan Qu et al. MOLECULAR MICROBIOLOGY
- Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
- (2017) Ryan R. Wick et al. PLoS Computational Biology
- MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
- (2016) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- Aerobic biotransformation of 3-methylindole to ring cleavage products by Cupriavidus sp. strain KK10
- (2015) Kimiko Fukuoka et al. BIODEGRADATION
- JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison
- (2015) Michael Richter et al. BIOINFORMATICS
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- Biodegradation of indole by a newly isolated Cupriavidus sp. SHE
- (2015) Yuanyuan Qu et al. JOURNAL OF ENVIRONMENTAL SCIENCES
- Skatole remediation potential ofRhodopseudomonas palustrisWKU-KDNS3 isolated from an animal waste lagoon
- (2015) N. Sharma et al. LETTERS IN APPLIED MICROBIOLOGY
- Novel Three-Component Rieske Non-Heme Iron Oxygenase System Catalyzing theN-Dealkylation of Chloroacetanilide Herbicides in Sphingomonads DC-6 and DC-2
- (2014) Qing Chen et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- AromaDeg, a novel database for phylogenomics of aerobic bacterial degradation of aromatics
- (2014) Márcia Duarte et al. Database-The Journal of Biological Databases and Curation
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- (2013) Xiao Meng et al. FOOD SCIENCE AND BIOTECHNOLOGY
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- (2012) Raffael Wesoly et al. Animals
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- (2011) Georg Fuchs et al. NATURE REVIEWS MICROBIOLOGY
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
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- (2009) D. Tischler et al. JOURNAL OF BACTERIOLOGY
- Biodegradation aspects of Polycyclic Aromatic Hydrocarbons (PAHs): A review
- (2009) A.K. Haritash et al. JOURNAL OF HAZARDOUS MATERIALS
- 3-Methylindole is Mutagenic and a Possible Pulmonary Carcinogen
- (2009) Jessica M. Weems et al. TOXICOLOGICAL SCIENCES
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- (2008) L MARTINKOVA et al. ENVIRONMENT INTERNATIONAL
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