Characterization of the role of Kunitz‐type protease inhibitor domain in dimerization of amyloid precursor protein

ColabFold: making protein folding accessible to all

(2022) Milot Mirdita et al.   NATURE METHODS

Martini 3: a general purpose force field for coarse-grained molecular dynamics

(2021) Paulo C. T. Souza et al.   NATURE METHODS

Highly accurate protein structure prediction with AlphaFold

(2021) John Jumper et al.   NATURE

Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem

(2021) Rodrigo V. Honorato et al.   Frontiers in Molecular Biosciences

The amyloid hypothesis of Alzheimer's disease at 25 years

(2016) Dennis J Selkoe et al.   EMBO Molecular Medicine

The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes

(2016) G.C.P. van Zundert et al.   JOURNAL OF MOLECULAR BIOLOGY

The structural biology of the amyloid precursor protein APP – a complex puzzle reveals its multi-domain architecture

(2014) Ina Coburger et al.   BIOLOGICAL CHEMISTRY

An improved surface passivation method for single-molecule studies

(2014) Boyang Hua et al.   NATURE METHODS

H-Ras forms dimers on membrane surfaces via a protein-protein interface

(2014) W.-C. Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improved Parameters for the Martini Coarse-Grained Protein Force Field

(2012) Djurre H. de Jong et al.   Journal of Chemical Theory and Computation

Single-molecule pull-down for studying protein interactions

(2012) Ankur Jain et al.   Nature Protocols

The E2 Domains of APP and APLP1 Share a Conserved Mode of Dimerization

(2011) Sangwon Lee et al.   BIOCHEMISTRY

APP dimer formation is initiated in the endoplasmic reticulum and differs between APP isoforms

(2011) Simone Isbert et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Probing cellular protein complexes using single-molecule pull-down

(2011) Ankur Jain et al.   NATURE

g_wham—A Free Weighted Histogram Analysis Implementation Including Robust Error and Autocorrelation Estimates

(2010) Jochen S. Hub et al.   Journal of Chemical Theory and Computation

Induced Dimerization of the Amyloid Precursor Protein Leads to Decreased Amyloid-β Protein Production

(2009) Simone Eggert et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Combining an Elastic Network With a Coarse-Grained Molecular Force Field: Structure, Dynamics, and Intermolecular Recognition

(2009) Xavier Periole et al.   Journal of Chemical Theory and Computation