Coalescent models for developmental biology and the spatio-temporal dynamics of growing tissues

Positional information and reaction-diffusion: two big ideas in developmental biology combine

(2015) J. B. A. Green et al.   DEVELOPMENT

A Big Bang model of human colorectal tumor growth

(2015) Andrea Sottoriva et al.   NATURE GENETICS

Nuclear to cytoplasmic shuttling of ERK promotes differentiation of muscle stem/progenitor cells

(2014) I. Michailovici et al.   DEVELOPMENT

A theoretical framework for the regulation of Shh morphogen-controlled gene expression

(2014) M. Cohen et al.   DEVELOPMENT

Cell lineage tracing in the developing enteric nervous system: superstars revealed by experiment and simulation

(2014) B. L. Cheeseman et al.   Journal of the Royal Society Interface

A multiscale analysis of nutrient transport and biological tissue growthin vitro

(2014) R. D. O'Dea et al.   MATHEMATICAL MEDICINE AND BIOLOGY-A JOURNAL OF THE IMA

Coalescence 2.0: a multiple branching of recent theoretical developments and their applications

(2014) Aurélien Tellier et al.   MOLECULAR ECOLOGY

Biased competition between Lgr5 intestinal stem cells driven by oncogenic mutation induces clonal expansion

(2013) Hugo J. Snippert et al.   EMBO REPORTS

Modeling biological tissue growth: Discrete to continuum representations

(2013) Jack D. Hywood et al.   PHYSICAL REVIEW E

Defining Stem Cell Dynamics in Models of Intestinal Tumor Initiation

(2013) L. Vermeulen et al.   SCIENCE

Lineage Tracing

(2012) Kai Kretzschmar et al.   CELL

Genealogies of rapidly adapting populations

(2012) R. A. Neher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lineage Tracing Reveals Lgr5+ Stem Cell Activity in Mouse Intestinal Adenomas

(2012) A. G. Schepers et al.   SCIENCE

Many colorectal cancers are “flat” clonal expansions

(2011) Kimberly D. Siegmund et al.   CELL CYCLE

Tutorial on agent-based modelling and simulation

(2011) C M Macal et al.   Journal of Simulation

Intestinal Crypt Homeostasis Results from Neutral Competition between Symmetrically Dividing Lgr5 Stem Cells

(2010) Hugo J. Snippert et al.   CELL

Genetic demixing and evolution in linear stepping stone models

(2010) K. S. Korolev et al.   REVIEWS OF MODERN PHYSICS

Universal tree structures in directed polymers and models of evolving populations

(2008) Éric Brunet et al.   PHYSICAL REVIEW E