PPISB: A Novel Network-Based Algorithm of Predicting Protein-Protein Interactions With Mixed Membership Stochastic Blockmodel

Multi-view heterogeneous molecular network representation learning for protein–protein interaction prediction

(2022) Xiao-Rui Su et al.   BMC BIOINFORMATICS

A survey on computational models for predicting protein–protein interactions

(2021) Lun Hu et al.   BRIEFINGS IN BIOINFORMATICS

A deep learning method for repurposing antiviral drugs against new viruses via multi-view nonnegative matrix factorization and its application to SARS-CoV-2

(2021) Xiaorui Su et al.   BRIEFINGS IN BIOINFORMATICS

HINGRL: predicting drug–disease associations with graph representation learning on heterogeneous information networks

(2021) Bo-Wei Zhao et al.   BRIEFINGS IN BIOINFORMATICS

An Effective Link-Based Clustering Algorithm for Detecting Overlapping Protein Complexes in Protein-Protein Interaction Networks

(2021) Lun Hu et al.   IEEE Transactions on Network Science and Engineering

A Distributed Framework for Large-scale Protein-protein Interaction Data Analysis and Prediction Using MapReduce

(2021) Lun Hu et al.   IEEE-CAA Journal of Automatica Sinica

Identifying Protein Complexes From Protein-Protein Interaction Networks Based on Fuzzy Clustering and GO Semantic Information

(2021) Xiangyu Pan et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

FCTP-WSRC: Protein–Protein Interactions Prediction via Weighted Sparse Representation Based Classification

(2020) Meng Kong et al.   Frontiers in Genetics

Protein Interface Complementarity and Gene Duplication Improve Link Prediction of Protein-Protein Interaction Network

(2020) Yu Chen et al.   Frontiers in Genetics

HiSCF: leveraging higher-order structures for clustering analysis in biological networks

(2020) Lun Hu et al.   BIOINFORMATICS

Network-based prediction of protein interactions

(2019) István A. Kovács et al.   Nature Communications

Similarity-based future common neighbors model for link prediction in complex networks

(2018) Shibao Li et al.   Scientific Reports

Extracting Coevolutionary Features from Protein Sequences for Predicting Protein-Protein Interactions

(2017) Lun Hu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A New Feature Vector Based on Gene Ontology Terms for Protein-Protein Interaction Prediction

(2017) Sanghamitra Bandyopadhyay et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A Map of Human Mitochondrial Protein Interactions Linked to Neurodegeneration Reveals New Mechanisms of Redox Homeostasis and NF-κB Signaling

(2017) Ramy H. Malty et al.   Cell Systems

Evolutionary analysis and interaction prediction for protein-protein interaction network in geometric space

(2017) Lei Huang et al.   PLoS One

Predicting Protein–Protein Interactions from the Molecular to the Proteome Level

(2016) Ozlem Keskin et al.   CHEMICAL REVIEWS

Systematic Genetic Screens Reveal the Dynamic Global Functional Organization of the Bacterial Translation Machinery

(2016) Alla Gagarinova et al.   Cell Reports

Discovering Variable-Length Patterns in Protein Sequences for Protein-Protein Interaction Prediction

(2015) Lun Hu et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

A Proteome-Scale Map of the Human Interactome Network

(2014) Thomas Rolland et al.   CELL

A MapReduce based parallel SVM for large-scale predicting protein–protein interactions

(2014) Zhu-Hong You et al.   NEUROCOMPUTING

Human protein–protein interaction prediction by a novel sequence-based co-evolution method: co-evolutionary divergence

(2012) Chia Hsin Liu et al.   BIOINFORMATICS

Structure-based prediction of protein–protein interactions on a genome-wide scale

(2012) Qiangfeng Cliff Zhang et al.   NATURE

The IntAct molecular interaction database in 2012

(2011) S. Kerrien et al.   NUCLEIC ACIDS RESEARCH