McAN: a novel computational algorithm and platform for constructing and visualizing haplotype networks

Archival influenza virus genomes from Europe reveal genomic variability during the 1918 pandemic

(2022) Livia V. Patrono et al.   Nature Communications

Antibody escape of SARS-CoV-2 Omicron BA.4 and BA.5 from vaccine and BA.1 serum

(2022) Aekkachai Tuekprakhon et al.   CELL

Pandemic-Scale Phylogenomics Reveals The SARS-CoV-2 Recombination Landscape

(2022) Yatish Turakhia et al.   NATURE

TPD: a web tool for tipping-point detection based on dynamic network biomarker

(2022) Pei Chen et al.   BRIEFINGS IN BIOINFORMATICS

Multiple lineages of monkeypox virus detected in the United States, 2021–2022

(2022) Crystal M. Gigante et al.   SCIENCE

Evolutionary analysis and lineage designation of SARS-CoV-2 genomes

(2021) Xiaolu Tang et al.   Science Bulletin

Genomic Epidemiology of SARS-CoV-2 in Pakistan

(2021) Shuhui Song et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Nursing homes and the elderly regarding the COVID-19 pandemic: situation report from Hungary

(2020) Gábor Kemenesi et al.   GeroScience

Haplotype networks of SARS-CoV-2 infections in the Diamond Princess cruise ship outbreak

(2020) Tsuyoshi Sekizuka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR

(2020) Shuhui Song et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

A First Y-Chromosomal Haplotype Network to Investigate Male-Driven Population Dynamics in Domestic and Wild Bactrian Camels

(2019) Sabine Felkel et al.   Frontiers in Genetics

Analysis of haplotype networks: The randomized minimum spanning tree method

(2018) Emmanuel Paradis   Methods in Ecology and Evolution

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution