TPD: a web tool for tipping-point detection based on dynamic network biomarker

Detecting the critical states during disease development based on temporal network flow entropy

(2022) Rong Gao et al.   BRIEFINGS IN BIOINFORMATICS

Detecting critical transition signals from single-cell transcriptomes to infer lineage-determining transcription factors

(2022) Xinan H Yang et al.   NUCLEIC ACIDS RESEARCH

Resilience function uncovers the critical transitions in cancer initiation

(2021) Yan Li et al.   BRIEFINGS IN BIOINFORMATICS

Disease characterization using a partial correlation-based sample-specific network

(2020) Yanhong Huang et al.   BRIEFINGS IN BIOINFORMATICS

Microbes and complex diseases: from experimental results to computational models

(2020) Yan Zhao et al.   BRIEFINGS IN BIOINFORMATICS

Single-sample landscape entropy reveals the imminent phase transition during disease progression

(2019) Rui Liu et al.   BIOINFORMATICS

NCMCMDA: miRNA–disease association prediction through neighborhood constraint matrix completion

(2019) Xing Chen et al.   BRIEFINGS IN BIOINFORMATICS

Detection for disease tipping points by landscape dynamic network biomarkers

(2018) Xiaoping Liu et al.   National Science Review

Detecting the tipping points in a three-state model of complex diseases by temporal differential networks

(2017) Pei Chen et al.   Journal of Translational Medicine

Dynamic versus static biomarkers in cancer immune checkpoint blockade: unravelling complexity

(2017) W. Joost Lesterhuis et al.   NATURE REVIEWS DRUG DISCOVERY

Single-cell entropy for accurate estimation of differentiation potency from a cell’s transcriptome

(2017) Andrew E. Teschendorff et al.   Nature Communications

Single-Cell-Based Analysis Highlights a Surge in Cell-to-Cell Molecular Variability Preceding Irreversible Commitment in a Differentiation Process

(2016) Angélique Richard et al.   PLOS BIOLOGY

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Network biomarkers reveal dysfunctional gene regulations during disease progression

(2013) Tao Zeng et al.   FEBS Journal

Early Diagnosis of Complex Diseases by Molecular Biomarkers, Network Biomarkers, and Dynamical Network Biomarkers

(2013) Rui Liu et al.   MEDICINAL RESEARCH REVIEWS

Detecting early-warning signals for sudden deterioration of complex diseases by dynamical network biomarkers

(2012) Luonan Chen et al.   Scientific Reports

Systems Biology Modeling of the Radiation Sensitivity Network: A Biomarker Discovery Platform

(2009) Steven Eschrich et al.   INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICS

Early-warning signals for critical transitions

(2009) Marten Scheffer et al.   NATURE

The Knowledge-Integrated Network Biomarkers Discovery for Major Adverse Cardiac Events

(2008) Guangxu Jin et al.   JOURNAL OF PROTEOME RESEARCH