m5U-SVM: identification of RNA 5-methyluridine modification sites based on multi-view features of physicochemical features and distributed representation

iLearnPlus: a comprehensive and automated machine-learning platform for nucleic acid and protein sequence analysis, prediction and visualization

(2021) Zhen Chen et al.   NUCLEIC ACIDS RESEARCH

iRNA-m5U: A sequence based predictor for identifying 5-methyluridine modification sites in Saccharomyces cerevisiae

(2021) Pengmian Feng et al.   METHODS

Prediction of RBP binding sites on circRNAs using an LSTM-based deep sequence learning architecture

(2021) Zhengfeng Wang et al.   BRIEFINGS IN BIOINFORMATICS

LSTM-PHV: prediction of human-virus protein–protein interactions by LSTM with word2vec

(2021) Sho Tsukiyama et al.   BRIEFINGS IN BIOINFORMATICS

Mass Spectrometry-Based Targeted Serum Monomethylated Ribonucleosides Profiling for Early Detection of Breast Cancer

(2021) Zhihao Fang et al.   Frontiers in Molecular Biosciences

TRMT2B is responsible for both tRNA and rRNA m5U-methylation in human mitochondria

(2020) Christopher A. Powell et al.   RNA Biology

Disease Activity-Associated Alteration of mRNA m5 C Methylation in CD4+ T Cells of Systemic Lupus Erythematosus

(2020) Gangqiang Guo et al.   Frontiers in Cell and Developmental Biology

m5UPred: a web server for the prediction of RNA 5-methyluridine (m5U) sites from sequences

(2020) Jie Jiang et al.   Molecular Therapy-Nucleic Acids

i6mA-Pred: Identifying DNA N6-methyladenine sites in the rice genome

(2019) Wei Chen et al.   BIOINFORMATICS

FICC-Seq: a method for enzyme-specified profiling of methyl-5-uridine in cellular RNA

(2019) Jean-Michel Carter et al.   NUCLEIC ACIDS RESEARCH

Pseudouridylation of tRNA-Derived Fragments Steers Translational Control in Stem Cells

(2018) Nicola Guzzi et al.   CELL

PTM-ssMP: A Web Server for Predicting Different Types of Post-translational Modification Sites Using Novel Site-specific Modification Profile

(2018) Yu Liu et al.   International Journal of Biological Sciences

HBPred: a tool to identify growth hormone-binding proteins

(2018) Hua Tang et al.   International Journal of Biological Sciences

Cell Group Recognition Method Based on Adaptive Mutation PSO-SVM

(2018) Yue Wang et al.   Cells

TRMT2A is a novel cell cycle regulator that suppresses cell proliferation

(2018) Yu-Hsin Chang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The RNA modification landscape in human disease

(2017) Nicky Jonkhout et al.   RNA

The Pivotal Regulatory Landscape of RNA Modifications

(2014) Sheng Li et al.   Annual Review of Genomics and Human Genetics

Explaining prediction models and individual predictions with feature contributions

(2013) Erik Štrumbelj et al.   KNOWLEDGE AND INFORMATION SYSTEMS

N6-methyladenosine-dependent regulation of messenger RNA stability

(2013) Xiao Wang et al.   NATURE

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

(2013) Wei Chen et al.   NUCLEIC ACIDS RESEARCH

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Discriminative prediction of mammalian enhancers from DNA sequence

(2011) D. Lee et al.   GENOME RESEARCH