The development of a 30 K SNP genotyping tool targeting genomic regions of temperature and salinity adaptation in estuarine oyster

Development and validation of a 40-K multiple-SNP array for Pacific abalone (Haliotis discus hannai)

(2022) Junyu Liu et al.   AQUACULTURE

Twelve years of SAMtools and BCFtools

(2021) Petr Danecek et al.   GigaScience

Development and application of the Faba_bean_130K targeted next-generation sequencing SNP genotyping platform based on transcriptome sequencing

(2021) Chenyu Wang et al.   THEORETICAL AND APPLIED GENETICS

Comparison of growth, survival and fertility of the southern and northern populations of Crassostrea ariakensis and their hybrids in southern China

(2021) Yanping Qin et al.   AQUACULTURE

Chromosome‐level genome and population genomic analysis provide insights into the evolution and environmental adaptation of Jinjiang oyster Crassostrea ariakensis

(2021) Biao Wu et al.   Molecular Ecology Resources

Genome of the estuarine oyster provides insights into climate impact and adaptive plasticity

(2021) Ao Li et al.   Communications Biology

Construction of a high density linkage map in Oil Palm using SPET markers

(2020) Javier Herrero et al.   Scientific Reports

Fostering Conservation via an Integrated Use of Conventional Approaches and High-Throughput SPET Genotyping: A Case Study Using the Endangered Canarian Endemics Solanum lidii and S. vespertilio (Solanaceae)

(2020) Pietro Gramazio et al.   Frontiers in Plant Science

Research advances in the genomics and applications for molecular breeding of aquaculture animals

(2020) Xinxin You et al.   AQUACULTURE

Development of multiple SNP marker panels affordable to breeders through genotyping by target sequencing (GBTS) in maize

(2019) Zifeng Guo et al.   MOLECULAR BREEDING

Single primer enrichment technology as a tool for massive genotyping: a benchmark on black poplar and maize

(2019) Davide Scaglione et al.   ANNALS OF BOTANY

Transcriptome and Gene Coexpression Network Analyses of Two Wild Populations Provides Insight into the High-Salinity Adaptation Mechanisms of Crassostrea ariakensis

(2019) A. Xingyu Liu et al.   MARINE BIOTECHNOLOGY

A highly flexible and repeatable genotyping method for aquaculture studies based on target amplicon sequencing using next-generation sequencing technology

(2019) Mana Sato et al.   Scientific Reports

Single Primer Enrichment Technology (SPET) for High-Throughput Genotyping in Tomato and Eggplant Germplasm

(2019) Lorenzo Barchi et al.   Frontiers in Plant Science

A targeted genotyping-by-sequencing tool (Rapture) for genomics-assisted breeding in oat

(2019) Wubishet A. Bekele et al.   THEORETICAL AND APPLIED GENETICS

OUP accepted manuscript

(2018)   BIOINFORMATICS

Applications of genotyping by sequencing in aquaculture breeding and genetics

(2017) Diego Robledo et al.   Reviews in Aquaculture

Construction and evaluation of a high-density SNP array for the Pacific oyster (Crassostrea gigas)

(2017) Haigang Qi et al.   PLoS One

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

pophelper: an R package and web app to analyse and visualize population structure

(2016) R. M. Francis   Molecular Ecology Resources

A next-generation marker genotyping platform (AmpSeq) in heterozygous crops: a case study for marker-assisted selection in grapevine

(2016) Shanshan Yang et al.   Horticulture Research

Targeted capture in evolutionary and ecological genomics

(2015) Matthew R. Jones et al.   MOLECULAR ECOLOGY

Interspecific hybridization between Crassostrea angulata and C. ariakensis

(2015) Tuo Yao et al.   Journal of Ocean University of China

Mitochondrial DNA sequence analysis from multiple gene fragments reveals genetic heterogeneity of Crassostrea ariakensis in East Asia

(2014) Woo-Jin Kim et al.   Genes & Genomics

Single nucleotide polymorphism genotyping using Kompetitive Allele Specific PCR (KASP): overview of the technology and its application in crop improvement

(2013) Kassa Semagn et al.   MOLECULAR BREEDING

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Oyster Reefs at Risk and Recommendations for Conservation, Restoration, and Management

(2011) Michael W. Beck et al.   BIOSCIENCE

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Population genetics of Crassostrea ariakensis in Asia inferred from microsatellite markers

(2010) Jie Xiao et al.   MARINE BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Identification of Crassostrea ariakensis and Related Oysters by Multiplex Species-Specific PCR

(2008) Haiyan Wang et al.   JOURNAL OF SHELLFISH RESEARCH

Suminoe Oyster (Crassostrea ariakensis) Culture in Korea

(2008) Ho Seop Yoon et al.   JOURNAL OF SHELLFISH RESEARCH