Effects of plants-associated microbiota on cultivation and quality of Chinese herbal medicines

Phyllosphere Microorganisms: Sources, Drivers, and Their Interactions with Plant Hosts

(2022) Nuohan Xu et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

High-throughput, single-microbe genomics with strain resolution, applied to a human gut microbiome

(2022) Wenshan Zheng et al.   SCIENCE

High-throughput cultivation and identification of bacteria from the plant root microbiota

(2021) Jingying Zhang et al.   Nature Protocols

Primary and secondary metabolites produced in Salvia miltiorrhiza hairy roots by an endophytic fungal elicitor from Mucor fragilis

(2021) Wenjuan Xu et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Pathological Impact on the Phyllosphere Microbiota of Artemisia argyi by Haze

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Phyllosphere microbiome: Diversity and functions

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Core endophyte communities of different citrus varieties from citrus growing regions in China

(2020) Shahzad Munir et al.   Scientific Reports

Structure, Function, Diversity, and Composition of Fungal Communities in Rhizospheric Soil of Coptis chinensis Franch under a Successive Cropping System

(2020) Mohammad Murtaza Alami et al.   Plants-Basel

Application of Identification and Evaluation Techniques for Ethnobotanical Medicinal Plant of Genus Panax: A Review

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Endophytic fungi from Passiflora incarnata: an antioxidant compound source

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Review on biopesticide production by Bacillus thuringiensis subsp. kurstaki since 1990: Focus on bioprocess parameters

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Microbial communities in crop phyllosphere and root endosphere are more resistant than soil microbiota to fertilization

(2020) Anqi Sun et al.   SOIL BIOLOGY & BIOCHEMISTRY

Biofertilizers regulate the soil microbial community and enhance Panax ginseng yields

(2019) Linlin Dong et al.   Chinese Medicine

Comparative Transcriptomics and Proteomics of Atractylodes lancea in Response to Endophytic Fungus Gilmaniella sp. AL12 Reveals Regulation in Plant Metabolism

(2019) Jie Yuan et al.   Frontiers in Microbiology

Analysis of Chuanxiong Rhizoma substrate on production of ligustrazine in endophytic Bacillus Subtilis by ultra performance liquid chromatography‐quadrupole time‐of‐flight mass spectrometry

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Characterization of Dark Septate Endophytic Fungi and Improve the Performance of Liquorice Under Organic Residue Treatment

(2019) Chao He et al.   Frontiers in Microbiology

Synthetic microbiota reveal priority effects and keystone strains in the Arabidopsis phyllosphere

(2019) Charlotte I. Carlström et al.   Nature Ecology & Evolution

Endophytes from Ginkgo biloba and their secondary metabolites

(2019) Zhihui Yuan et al.   Chinese Medicine

Antifungal effects of volatile organic compounds from the endophytic fungus Cryptosporiopsis ericae Cc-HG-7 isolated from Coptis chinensis Franch

(2018) Xiang-hui Zhang et al.   BIOCONTROL SCIENCE AND TECHNOLOGY

Core Microbiome of Medicinal Plant Salvia miltiorrhiza Seed: A Rich Reservoir of Beneficial Microbes for Secondary Metabolism?

(2018) Haimin Chen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Roles of Plant-Associated Microbiota in Traditional Herbal Medicine

(2018) Weijuan Huang et al.   TRENDS IN PLANT SCIENCE

Bipartite interactions, antibiotic production and biosynthetic potential of the Arabidopsis leaf microbiome

(2018) Eric J. N. Helfrich et al.   Nature Microbiology

Endophytic Pseudomonas induces metabolic flux changes that enhance medicinal sesquiterpenoid accumulation in Atractylodes lancea

(2018) Jia–Yu Zhou et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genome-wide association studies on the phyllosphere microbiome: Embracing complexity in host-microbe interactions

(2018) Kathleen Beilsmith et al.   PLANT JOURNAL

Soil parameters drive the diversity of Citrus sinensis rhizosphere microbiota which exhibits a potential in plant drought stress alleviation

(2018) Marwa Cherni et al.   APPLIED SOIL ECOLOGY

High-throughput sequencing technology reveals that continuous cropping of American ginseng results in changes in the microbial community in arable soil

(2017) Linlin Dong et al.   Chinese Medicine

Effects of cultivation ages and modes on microbial diversity in the rhizosphere soil of Panax ginseng

(2016) Chunping Xiao et al.   Journal of Ginseng Research

Host species identity, site and time drive temperate tree phyllosphere bacterial community structure

(2016) Isabelle Laforest-Lapointe et al.   Microbiome

Advances in the study on microbial fermentation and transformation of traditional Chinese medicine

(2016) Wu Tianxiang et al.   African Journal of Microbiology Research

Endophytic Fungi from Frankincense Tree Improves Host Growth and Produces Extracellular Enzymes and Indole Acetic Acid

(2016) Abdul Latif Khan et al.   PLoS One

The Growing Season, but Not the Farming System, Is a Food Safety Risk Determinant for Leafy Greens in the Mid-Atlantic Region of the United States

(2015) Sasha C. Marine et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The importance of the microbiome of the plant holobiont

(2015) Philippe Vandenkoornhuyse et al.   NEW PHYTOLOGIST

Ecological Succession and Stochastic Variation in the Assembly of Arabidopsis thaliana Phyllosphere Communities

(2014) L. Maignien et al.   mBio

Metagenomic analysis: the challenge of the data bonanza

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Current opportunities and challenges in microbial metagenome analysis--a bioinformatic perspective

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From genomics to metagenomics

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Fungal secondary metabolites – Strategies to activate silent gene clusters

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A complex journey: transmission of microbial symbionts

(2010) Monika Bright et al.   NATURE REVIEWS MICROBIOLOGY

Single-molecule sequencing of an individual human genome

(2009) Dmitry Pushkarev et al.   NATURE BIOTECHNOLOGY

Characterization of bacterial endophytes of sweet potato plants

(2009) Zareen Khan et al.   PLANT AND SOIL