Bitter-RF: A random forest machine model for recognizing bitter peptides

Gastroprotective Effect of Polypeptide-K Isolated from Momordica charantia’s Seeds on Multiple Experimental Gastric Ulcer Models in Rats

(2022) Nurul ’Ain Abu Bakar et al.   Evidence-based Complementary and Alternative Medicine

SLNL: A novel method for gene selection and phenotype classification

(2022) HaiHui Huang et al.   INTERNATIONAL JOURNAL OF INTELLIGENT SYSTEMS

dPromoter-XGBoost: Detecting promoters and strength by combining multiple descriptors and feature selection using XGBoost

(2022) Hongfei Li et al.   METHODS

Towards a better prediction of subcellular location of long non-coding RNA

(2022) Zhao-Yue Zhang et al.   Frontiers of Computer Science

MLCPP 2.0: An Updated Cell-penetrating Peptides and Their Uptake Efficiency Predictor

(2022) Balachandran Manavalan et al.   JOURNAL OF MOLECULAR BIOLOGY

PSnoD: identifying potential snoRNA-disease associations based on bounded nuclear norm regularization

(2022) Zijie Sun et al.   BRIEFINGS IN BIOINFORMATICS

TACOS: a novel approach for accurate prediction of cell-specific long noncoding RNAs subcellular localization

(2022) Young-Jun Jeon et al.   BRIEFINGS IN BIOINFORMATICS

Identify Bitter Peptides by Using Deep Representation Learning Features

(2022) Jici Jiang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Identification of potential inhibitors, conformational dynamics, and mechanistic insights into mutant Kirsten rat sarcoma virus (G13D) driven cancers

(2022) Iftikhar A. Tayubi et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

MLACP 2.0: An updated machine learning tool for anticancer peptide prediction

(2022) Le Thi Phan et al.   Computational and Structural Biotechnology Journal

A novel meta-analysis based on data augmentation and elastic data shared lasso regularization for gene expression

(2022) Hai-Hui Huang et al.   BMC BIOINFORMATICS

A Statistical Analysis of the Sequence and Structure of Thermophilic and Non-Thermophilic Proteins

(2022) Zahoor Ahmed et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Cellinker: a platform of ligand-receptor interactions for intercellular communication analysis

(2021) Yang Zhang et al.   BIOINFORMATICS

BERT4Bitter: a bidirectional encoder representations from transformers (BERT)-based model for improving the prediction of bitter peptides

(2021) Phasit Charoenkwan et al.   BIOINFORMATICS

The stacking strategy-based hybrid framework for identifying non-coding RNAs

(2021) Xin Wang et al.   BRIEFINGS IN BIOINFORMATICS

Anticancer peptides prediction with deep representation learning features

(2021) Zhibin Lv et al.   BRIEFINGS IN BIOINFORMATICS

iDHS-Deep: an integrated tool for predicting DNase I hypersensitive sites by deep neural network

(2021) Fu-Ying Dao et al.   BRIEFINGS IN BIOINFORMATICS

Risk Prediction of Diabetes: Big data mining with fusion of multifarious physical examination indicators

(2021) Hui Yang et al.   Information Fusion

iLearnPlus: a comprehensive and automated machine-learning platform for nucleic acid and protein sequence analysis, prediction and visualization

(2021) Zhen Chen et al.   NUCLEIC ACIDS RESEARCH

Predicting therapeutic drugs for hepatocellular carcinoma based on tissue-specific pathways

(2021) Liang Yu et al.   PLoS Computational Biology

Identifying Plant Pentatricopeptide Repeat Proteins Using a Variable Selection Method

(2021) Xudong Zhao et al.   Frontiers in Plant Science

EPSOL: sequence-based protein solubility prediction using multidimensional embedding

(2021) Xiang Wu et al.   BIOINFORMATICS

A network embedding framework based on integrating multiplex network for drug combination prediction

(2021) Liang Yu et al.   BRIEFINGS IN BIOINFORMATICS

DLpTCR: an ensemble deep learning framework for predicting immunogenic peptide recognized by T cell receptor

(2021) Zhaochun Xu et al.   BRIEFINGS IN BIOINFORMATICS

STALLION: a stacking-based ensemble learning framework for prokaryotic lysine acetylation site prediction

(2021) Shaherin Basith et al.   BRIEFINGS IN BIOINFORMATICS

PREDAIP: Computational Prediction and Analysis for Anti-inflammatory Peptide via a Hybrid Feature Selection Technique

(2021) Dan Lin et al.   Current Bioinformatics

SPLSN: An efficient tool for survival analysis and biomarker selection

(2021) Hai‐Hui Huang et al.   INTERNATIONAL JOURNAL OF INTELLIGENT SYSTEMS

iBitter-Fuse: A Novel Sequence-Based Bitter Peptide Predictor by Fusing Multi-View Features

(2021) Phasit Charoenkwan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

CellCall: integrating paired ligand–receptor and transcription factor activities for cell–cell communication

(2021) Yang Zhang et al.   NUCLEIC ACIDS RESEARCH

Editorial: Feature Representation and Learning Methods With Applications in Protein Secondary Structure

(2021) Ni Yan et al.   Frontiers in Bioengineering and Biotechnology

ReRF-Pred: predicting amyloidogenic regions of proteins based on their pseudo amino acid composition and tripeptide composition

(2021) Zhixia Teng et al.   BMC BIOINFORMATICS

A deep learning model to identify gene expression level using cobinding transcription factor signals

(2021) Lirong Zhang et al.   BRIEFINGS IN BIOINFORMATICS

iRice-MS: An integrated XGBoost model for detecting multitype post-translational modification sites in rice

(2021) Hao Lv et al.   BRIEFINGS IN BIOINFORMATICS

NmRF: identification of multispecies RNA 2’-O-methylation modification sites from RNA sequences

(2021) Chunyan Ao et al.   BRIEFINGS IN BIOINFORMATICS

iAtbP-Hyb-EnC: Prediction of antitubercular peptides via heterogeneous feature representation and genetic algorithm based ensemble learning model

(2021) Shahid Akbar et al.   COMPUTERS IN BIOLOGY AND MEDICINE

A novel multi-objective metaheuristic algorithm for protein-peptide docking and benchmarking on the LEADS-PEP dataset

(2021) Yosef Masoudi-Sobhanzadeh et al.   COMPUTERS IN BIOLOGY AND MEDICINE

BDselect: a package for k-mer selection based on the binomial distribution

(2021) Fu-Ying Dao et al.   Current Bioinformatics

Novel peptide—based inhibitor for targeted inhibition of T cell function

(2021) Ashna Gauthaman et al.   Journal of Cell Communication and Signaling

RFhy-m2G: Identification of RNA N2-methylguanosine modification sites based on random forest and hybrid features

(2021) Chunyan Ao et al.   METHODS

RF-PseU: A Random Forest Predictor for RNA Pseudouridine Sites

(2020) Zhibin Lv et al.   Frontiers in Bioengineering and Biotechnology

HLPpred-Fuse: improved and robust prediction of hemolytic peptide and its activity by fusing multiple feature representation

(2020) Md Mehedi Hasan et al.   BIOINFORMATICS

A review on the methods of peptide-MHC binding prediction

(2020) Yang Liu et al.   Current Bioinformatics

mcIRBP-19 of Bitter Melon Peptide Effectively Regulates Diabetes Mellitus (DM) Patients’ Blood Sugar Levels

(2020) Pang-Kuei Hsu et al.   Nutrients

iCarPS: a computational tool for identifying protein carbonylation sites by novel encoded features

(2020) Dan Zhang et al.   BIOINFORMATICS

HAMP: A Knowledgebase of Antimicrobial Peptides from Human Microbiome.

(2020) Viswajit Mulpuru et al.   Current Bioinformatics

iBitter-SCM: Identification and characterization of bitter peptides using a scoring card method with propensity scores of dipeptides

(2020) Phasit Charoenkwan et al.   GENOMICS

Deep-Kcr: accurate detection of lysine crotonylation sites using deep learning method

(2020) Hao Lv et al.   BRIEFINGS IN BIOINFORMATICS

Meta-i6mA: an interspecies predictor for identifying DNA N6-methyladenine sites of plant genomes by exploiting informative features in an integrative machine-learning framework

(2020) Md Mehedi Hasan et al.   BRIEFINGS IN BIOINFORMATICS

A Method for Identifying Vesicle Transport Proteins Based on LibSVM and MRMD

(2020) Zhiyu Tao et al.   Computational and Mathematical Methods in Medicine

The Prospect of Bioactive Peptide Research: A Review on Databases and Tools

(2020) FanYi Dong et al.   Current Bioinformatics

Prediction of transcription factors binding events based on epigenetic modifications in different human cells

(2020) Yan Huang et al.   Epigenomics

Discrimination of Thermophilic Proteins and Non-thermophilic Proteins Using Feature Dimension Reduction

(2020) Zifan Guo et al.   Frontiers in Bioengineering and Biotechnology

DeepYY1: a deep learning approach to identify YY1-mediated chromatin loops

(2020) Fu-Ying Dao et al.   BRIEFINGS IN BIOINFORMATICS

Prediction of bio-sequence modifications and the associations with diseases

(2020) Chunyan Ao et al.   Briefings in Functional Genomics

Identification and evaluation of immunogenic MHC-I and MHC-II binding peptides from Mycobacterium tuberculosis

(2020) Manaswini Jagadeb et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Protein Function Prediction: From Traditional Classifier to Deep Learning

(2019) Zhibin Lv et al.   PROTEOMICS

Quantitative Structure–Activity Relationship Study of Bitter Di-, Tri- and Tetrapeptides Using Integrated Descriptors

(2019) Xu et al.   MOLECULES

A Random Forest Sub-Golgi Protein Classifier Optimized via Dipeptide and Amino Acid Composition Features

(2019) Zhibin Lv et al.   Frontiers in Bioengineering and Biotechnology

ACPred-FL: a sequence-based predictor using effective feature representation to improve the prediction of anti-cancer peptides

(2018) Leyi Wei et al.   BIOINFORMATICS

HBPred: a tool to identify growth hormone-binding proteins

(2018) Hua Tang et al.   International Journal of Biological Sciences

Integration of deep feature representations and handcrafted features to improve the prediction of N 6 -methyladenosine sites

(2018) Leyi Wei et al.   NEUROCOMPUTING

Local-DPP: An improved DNA-binding protein prediction method by exploring local evolutionary information

(2017) Leyi Wei et al.   INFORMATION SCIENCES

Identification of the bioactive and consensus peptide motif from Momordica charantia insulin receptor-binding protein

(2016) Hsin-Yi Lo et al.   FOOD CHEMISTRY

Identification of Bitter Peptides in Aged Cheddar Cheese

(2014) Konstantinia Karametsi et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Predicting human microRNA-disease associations based on support vector machine

(2013) Qinghua Jiang et al.   International Journal of Data Mining and Bioinformatics

Identification of Bitter Peptides in Whey Protein Hydrolysate

(2013) Xiaowei Liu et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

QSBR Study of Bitter Taste of Peptides: Application of GA-PLS in Combination with MLR, SVM, and ANN Approaches

(2013) Somaieh Soltani et al.   Biomed Research International

Bitter peptides and bitter taste receptors

(2009) K. Maehashi et al.   CELLULAR AND MOLECULAR LIFE SCIENCES