An assessment of ancient DNA preservation in Holocene-Pleistocene fossil bone excavated from the world heritage Naracoorte Caves, South Australia

Bayesian Analysis of Radiocarbon Dates

(2016) Christopher Bronk Ramsey   RADIOCARBON

Reconstructing long-term human impacts on plant communities: an ecological approach based on lake sediment DNA

(2015) Johan Pansu et al.   MOLECULAR ECOLOGY

A critical evaluation of how ancient DNA bulk bone metabarcoding complements traditional morphological analysis of fossil assemblages

(2015) Alicia C. Grealy et al.   QUATERNARY SCIENCE REVIEWS

From Benchtop to Desktop: Important Considerations when Designing Amplicon Sequencing Workflows

(2015) Dáithí C. Murray et al.   PLoS One

Ancient DNA and the tropics: a rodent's tale

(2014) T. A. Gutierrez-Garcia et al.   Biology Letters

Postglacial reorganization of a small-mammal paleocommunity in southern Australia reveals thresholds of change

(2014) Amy C. Macken et al.   ECOLOGICAL MONOGRAPHS

Using palaeoenvironmental DNA to reconstruct past environments: progress and prospects

(2014) NICOLAS J. RAWLENCE et al.   JOURNAL OF QUATERNARY SCIENCE

Late Pleistocene Australian Marsupial DNA Clarifies the Affinities of Extinct Megafaunal Kangaroos and Wallabies

(2014) Bastien Llamas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European

(2014) Iñigo Olalde et al.   NATURE

Extinct New Zealand megafauna were not in decline before human colonization

(2014) Morten Erik Allentoft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient DNA reveals elephant birds and kiwi are sister taxa and clarifies ratite bird evolution

(2014) K. J. Mitchell et al.   SCIENCE

Environmental DNA for wildlife biology and biodiversity monitoring

(2014) Kristine Bohmann et al.   TRENDS IN ECOLOGY & EVOLUTION

Burial condition is the most important factor for mtDNA PCR amplification success in Palaeolithic equid remains from the Alpine foreland

(2014) Julia Elsner et al.   Archaeological and Anthropological Sciences

Characterizing DNA preservation in degraded specimens ofAmara alpina(Carabidae: Coleoptera)

(2013) Peter D. Heintzman et al.   Molecular Ecology Resources

Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA

(2013) Marie-Theres Gansauge et al.   Nature Protocols

A Megafauna’s Microfauna: Gastrointestinal Parasites of New Zealand’s Extinct Moa (Aves: Dinornithiformes)

(2013) Jamie R. Wood et al.   PLoS One

Resolving lost herbivore community structure using coprolites of four sympatric moa species (Aves: Dinornithiformes)

(2013) J. R. Wood et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thorough assessment of DNA preservation from fossil bone and sediments excavated from a late Pleistocene–Holocene cave deposit on Kangaroo Island, South Australia

(2013) Dalal Haouchar et al.   QUATERNARY SCIENCE REVIEWS

SHCal13 Southern Hemisphere Calibration, 0–50,000 Years cal BP

(2013) Alan G Hogg et al.   RADIOCARBON

Scrapheap Challenge: A novel bulk-bone metabarcoding method to investigate ancient DNA in faunal assemblages

(2013) Dáithí C. Murray et al.   Scientific Reports

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Variation and pattern in the responses of mammal faunas to Late Pleistocene climatic change in southeastern South Australia

(2012) Amy C. Macken et al.   JOURNAL OF QUATERNARY SCIENCE

Temporal Patterns of Nucleotide Misincorporations and DNA Fragmentation in Ancient DNA

(2012) Susanna Sawyer et al.   PLoS One

The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils

(2012) M. E. Allentoft et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

High-throughput sequencing of ancient plant and mammal DNA preserved in herbivore middens

(2012) Dáithí C. Murray et al.   QUATERNARY SCIENCE REVIEWS

Setting the stage – Building and working in an ancient DNA laboratory

(2011) Michael Knapp et al.   ANNALS OF ANATOMY-ANATOMISCHER ANZEIGER

DNA in ancient bone – Where is it located and how should we extract it?

(2011) Paula F. Campos et al.   ANNALS OF ANATOMY-ANATOMISCHER ANZEIGER

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Population dynamics and genetic changes of Picea abies in the South Carpathians revealed by pollen and ancient DNA analyses

(2011) Enikő K Magyari et al.   BMC EVOLUTIONARY BIOLOGY

True single-molecule DNA sequencing of a pleistocene horse bone

(2011) L. Orlando et al.   GENOME RESEARCH

Islands in the ice: detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA Meta-barcoding

(2011) TINA JØRGENSEN et al.   MOLECULAR ECOLOGY

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development

(2011) Marilyn B Renfree et al.   GENOME BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Modern and ancient DNA reveal recent partial replacement of caribou in the southwest Yukon

(2010) TYLER S. KUHN et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Fossil avian eggshell preserves ancient DNA

(2010) C. L. Oskam et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Source-sink dynamics structure a common montane mammal

(2009) KIM O’KEEFE et al.   MOLECULAR ECOLOGY

The next chapter in radiocarbon dating at the Australian National University: Status report on the single stage AMS

(2009) S.J. Fallon et al.   NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION B-BEAM INTERACTIONS WITH MATERIALS AND ATOMS

The evolutionary history of the extinct ratite moa and New Zealand Neogene paleogeography

(2009) M. Bunce et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA content and distribution in ancient feathers and potential to reconstruct the plumage of extinct avian taxa

(2009) N. J. Rawlence et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A late Pleistocene record of aeolian sedimentation in Blanche Cave, Naracoorte, South Australia

(2009) Nicolas Darrénougué et al.   QUATERNARY SCIENCE REVIEWS

Environment and excavation: Pre-lab impacts on ancient DNA analyses

(2008) Ruth Bollongino et al.   COMPTES RENDUS PALEVOL

Ancient DNA and conservation: lessons from the endangered kiwi of New Zealand

(2008) L. D SHEPHERD et al.   MOLECULAR ECOLOGY

Damage and degradation rates of extracellular DNA in marine sediments: implications for the preservation of gene sequences

(2008) C. CORINALDESI et al.   MOLECULAR ECOLOGY