Mycobiota and diet-derived fungal xenosiderophores promote Salmonella gastrointestinal colonization

Mucosal fungi promote gut barrier function and social behavior via Type 17 immunity

(2022) Irina Leonardi et al.   CELL

Crossing Kingdoms: How the Mycobiota and Fungal-Bacterial Interactions Impact Host Health and Disease

(2021) William Santus et al.   INFECTION AND IMMUNITY

The gut mycobiome of healthy mice is shaped by the environment and correlates with metabolic outcomes in response to diet

(2021) Tahliyah S. Mims et al.   Communications Biology

Haematopoietic cell transplantation outcomes are linked to intestinal mycobiota dynamics and an expansion of Candida parapsilosis complex species

(2021) Thierry Rolling et al.   Nature Microbiology

The European Union One Health 2020 Zoonoses Report

(2021) et al.   EFSA Journal

Xenosiderophore Utilization Promotes Bacteroides thetaiotaomicron Resilience during Colitis

(2020) Wenhan Zhu et al.   Cell Host & Microbe

High-resolution mycobiota analysis reveals dynamic intestinal translocation preceding invasive candidiasis

(2020) Bing Zhai et al.   NATURE MEDICINE

Altered Immunity of Laboratory Mice in the Natural Environment Is Associated with Fungal Colonization

(2020) Frank Yeung et al.   Cell Host & Microbe

The Taxon Hypothesis Paradigm—On the Unambiguous Detection and Communication of Taxa

(2020) Urmas Kõljalg et al.   Microorganisms

Human Anti-fungal Th17 Immunity and Pathology Rely on Cross-Reactivity against Candida albicans

(2019) Petra Bacher et al.   CELL

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Characterization of Aspergillus niger siderophore that mediates bioleaching of rare earth elements from phosphorites

(2019) Yehia Osman et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

The fungal mycobiome promotes pancreatic oncogenesis via activation of MBL

(2019) Berk Aykut et al.   NATURE

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

Identification of fungi in shotgun metagenomics datasets

(2018) Paul D. Donovan et al.   PLoS One

Investigating Colonization of the Healthy Adult Gastrointestinal Tract by Fungi

(2018) Thomas A. Auchtung et al.   mSphere

Expansion of commensal fungus Wallemia mellicola in the gastrointestinal mycobiota enhances the severity of allergic airway disease in mice

(2018) Joseph H. Skalski et al.   PLoS Pathogens

Intestinal fungi contribute to development of alcoholic liver disease

(2017) An-Ming Yang et al.   JOURNAL OF CLINICAL INVESTIGATION

Respiration of Microbiota-Derived 1,2-propanediol Drives Salmonella Expansion during Colitis

(2017) Franziska Faber et al.   PLoS Pathogens

Immunological Consequences of Intestinal Fungal Dysbiosis

(2016) Matthew L. Wheeler et al.   Cell Host & Microbe

Fungal microbiota dysbiosis in IBD

(2016) Harry Sokol et al.   GUT

Human Metabolome-derived Cofactors Are Required for the Antibacterial Activity of Siderocalin in Urine

(2016) Robin R. Shields-Cutler et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Microcins mediate competition among Enterobacteriaceae in the inflamed gut

(2016) Martina Sassone-Corsi et al.   NATURE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Typhoid toxin provides a window into typhoid fever and the biology ofSalmonellaTyphi

(2016) Jorge E. Galán   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pseudomonas fluorescens Pirates both Ferrioxamine and Ferricoelichelin Siderophores from Streptomyces ambofaciens

(2015) Justine Galet et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diverging roles of bacterial siderophores during infection

(2015) Victoria I. Holden et al.   Metallomics

The human gut mycobiome: pitfalls and potentials--a mycologists perspective

(2015) M. J. Suhr et al.   MYCOLOGIA

Characterization of Bacterial and Fungal Microbiome in Children with Hirschsprung Disease with and without a History of Enterocolitis: A Multicenter Study

(2015) Philip K. Frykman et al.   PLoS One

Siderophore production by streptomycetes—stability and alteration of ferrihydroxamates in heavy metal-contaminated soil

(2014) Eileen Schütze et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

The Cytokine IL-22 Promotes Pathogen Colonization by Suppressing Related Commensal Bacteria

(2014) Judith Behnsen et al.   IMMUNITY

Comparative Analysis of Salmonella Genomes Identifies a Metabolic Network for Escalating Growth in the Inflamed Gut

(2014) S.-P. Nuccio et al.   mBio

A retrospective study of secondary bacteraemia in hospitalised adults with community acquired non-typhoidal Salmonella gastroenteritis

(2013) Christopher M Parry et al.   BMC INFECTIOUS DISEASES

Probiotic Bacteria Reduce Salmonella Typhimurium Intestinal Colonization by Competing for Iron

(2013) Elisa Deriu et al.   Cell Host & Microbe

Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens

(2013) Katharine M. Ng et al.   NATURE

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents

(2013) Christian Hoffmann et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Fungi of the Murine Gut: Episodic Variation and Proliferation during Antibiotic Treatment

(2013) Serena Dollive et al.   PLoS One

The C-Type Lectin Receptor SIGNR3 Binds to Fungi Present in Commensal Microbiota and Influences Immune Regulation in Experimental Colitis

(2013) Magdalena Eriksson et al.   Frontiers in Immunology

FungiQuant: A broad-coverage fungal quantitative real-time PCR assay

(2012) Cindy M Liu et al.   BMC MICROBIOLOGY

Nutritional immunity: transition metals at the pathogen–host interface

(2012) M. Indriati Hood et al.   NATURE REVIEWS MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Host–Pathogen Interaction in Invasive Salmonellosis

(2012) Hanna K. de Jong et al.   PLoS Pathogens

Killing of Candida albicans Filaments by Salmonella enterica Serovar Typhimurium Is Mediated by sopB Effectors, Parts of a Type III Secretion System

(2011) Younghoon Kim et al.   EUKARYOTIC CELL

Contribution of Siderophore Systems to Growth and Urinary Tract Colonization of Asymptomatic Bacteriuria Escherichia coli

(2011) Rebecca E. Watts et al.   INFECTION AND IMMUNITY

Intestinal inflammation allows Salmonella to use ethanolamine to compete with the microbiota

(2011) P. Thiennimitr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gut inflammation provides a respiratory electron acceptor for Salmonella

(2010) Sebastian E. Winter et al.   NATURE

Lipocalin-2 Resistance Confers an Advantage to Salmonella enterica Serotype Typhimurium for Growth and Survival in the Inflamed Intestine

(2009) Manuela Raffatellu et al.   Cell Host & Microbe

Mucosal Lipocalin 2 Has Pro-Inflammatory and Iron-Sequestering Effects in Response to Bacterial Enterobactin

(2009) Michael A. Bachman et al.   PLoS Pathogens

Siderophores in Fungal Physiology and Virulence

(2008) Hubertus Haas et al.   Annual Review of Phytopathology

Fungi and inflammatory bowel diseases: Alterations of composition and diversity

(2008) Stephan J. Ott et al.   SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY