Near-chromosomal de novo assembly of Bengal tiger genome reveals genetic hallmarks of apex predation

Recent Evolutionary History of Tigers Highlights Contrasting Roles of Genetic Drift and Selection

(2021) Ellie E Armstrong et al.   MOLECULAR BIOLOGY AND EVOLUTION

High frequency of an otherwise rare phenotype in a small and isolated tiger population

(2021) Vinay Sagar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic evidence for inbreeding depression and purging of deleterious genetic variation in Indian tigers

(2021) Anubhab Khan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Indian cobra reference genome and transcriptome enables comprehensive identification of venom toxins

(2020) Kushal Suryamohan et al.   NATURE GENETICS

Are shed hair genomes the most effective noninvasive resource for estimating relationships in the wild?

(2020) Anubhab Khan et al.   Ecology and Evolution

Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens

(2020) Ross Barnett et al.   CURRENT BIOLOGY

A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism

(2020) Reuben M. Buckley et al.   PLoS Genetics

Tigers of the World: Genomics and Conservation

(2019) Shu-Jin Luo et al.   Annual Review of Animal Biosciences

De Novo Assembly of a Chromosome‐Level Reference Genome of Red Spotted Grouper ( Epinephelus akaara ) Using Nanopore Sequencing and Hi‐C

(2019) Hui Ge et al.   Molecular Ecology Resources

Runs of homozygosity: windows into population history and trait architecture

(2018) Francisco C. Ceballos et al.   NATURE REVIEWS GENETICS

A High-Quality, Long-Read De Novo Genome Assembly to Aid Conservation of Hawaii’s Last Remaining Crow Species

(2018) Jolene T. Sutton et al.   Genes

Genome-Wide Evolutionary Analysis of Natural History and Adaptation in the World’s Tigers

(2018) Yue-Chen Liu et al.   CURRENT BIOLOGY

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

New advances in sequence assembly

(2017) Adam M. Phillippy   GENOME RESEARCH

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families

(2017) Ioanna Kalvari et al.   NUCLEIC ACIDS RESEARCH

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds

(2017) Olga Dudchenko et al.   SCIENCE

Genome-wide signatures of complex introgression and adaptive evolution in the big cats

(2017) Henrique V. Figueiró et al.   Science Advances

Biallelic Mutations in GNB3 Cause a Unique Form of Autosomal-Recessive Congenital Stationary Night Blindness

(2016) Ajoy Vincent et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genomics advances the study of inbreeding depression in the wild

(2016) Marty Kardos et al.   Evolutionary Applications

Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

(2016) Nicholas H. Putnam et al.   GENOME RESEARCH

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Genetics of Taste Receptors

(2014) Alexander Bachmanov et al.   CURRENT PHARMACEUTICAL DESIGN

Whole Exome Analysis Identifies Frequent CNGA1 Mutations in Japanese Population with Autosomal Recessive Retinitis Pigmentosa

(2014) Satoshi Katagiri et al.   PLoS One

Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication

(2014) Michael J. Montague et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Status and Ecological Effects of the World's Largest Carnivores

(2014) W. J. Ripple et al.   SCIENCE

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

The tiger genome and comparative analysis with lion and snow leopard genomes

(2013) Yun Sung Cho et al.   Nature Communications

A splice variant in KRT71 is associated with curly coat phenotype of Selkirk Rex cats

(2013) Barbara Gandolfi et al.   Scientific Reports

Genomic Patterns of Homozygosity in Worldwide Human Populations

(2012) Trevor J. Pemberton et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer

(2012) Elizabeth P. Murchison et al.   CELL

Major taste loss in carnivorous mammals

(2012) P. Jiang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Specifying and Sustaining Pigmentation Patterns in Domestic and Wild Cats

(2012) C. B. Kaelin et al.   SCIENCE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Genome-wide synteny through highly sensitive sequence alignment: Satsuma

(2010) M. G. Grabherr et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Extreme variability among mammalian V1R gene families

(2009) J. M. Young et al.   GENOME RESEARCH

The integumentary skeleton of tetrapods: origin, evolution, and development

(2009) Matthew K. Vickaryous et al.   JOURNAL OF ANATOMY

Analyses of Sweet Receptor Gene (Tas1r2) and Preference for Sweet Stimuli in Species of Carnivora

(2009) X. Li et al.   JOURNAL OF HEREDITY

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

Human olfaction: from genomic variation to phenotypic diversity

(2009) Yehudit Hasin-Brumshtein et al.   TRENDS IN GENETICS

Why the Indian Subcontinent Holds the Key to Global Tiger Recovery

(2009) Samrat Mondol et al.   PLoS Genetics

Regulation of retinal cell fate specification by multiple transcription factors

(2007) Ryosuke Ohsawa et al.   BRAIN RESEARCH