Validation of a high-confidence regulatory network for gene-to-NUE phenotype in field-grown rice
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Validation of a high-confidence regulatory network for gene-to-NUE phenotype in field-grown rice
Authors
Keywords
-
Journal
Frontiers in Plant Science
Volume 13, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2022-11-25
DOI
10.3389/fpls.2022.1006044
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Decreasing Nitrogen Assimilation under Drought Stress by Suppressing DST-Mediated Activation of Nitrate Reductase 1.2 in Rice
- (2021) Mei-Ling Han et al. Molecular Plant
- Integration of Dual Stress Transcriptomes and Major QTLs from a Pair of Genotypes Contrasting for Drought and Chronic Nitrogen Starvation Identifies Key Stress Responsive Genes in Rice
- (2021) Amitha Mithra Sevanthi et al. Rice
- OsSPL9 Regulates Grain Number and Grain Yield in Rice
- (2021) Li Hu et al. Frontiers in Plant Science
- The intersection of nitrogen nutrition and water use in plants: new paths toward improved crop productivity
- (2020) Darren C Plett et al. JOURNAL OF EXPERIMENTAL BOTANY
- A balancing act: how plants integrate nitrogen and water signals
- (2020) Viviana Araus et al. JOURNAL OF EXPERIMENTAL BOTANY
- The strength and pattern of natural selection on gene expression in rice
- (2020) Simon C. Groen et al. NATURE
- Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade
- (2020) José M. Alvarez et al. Nature Communications
- Gene regulatory network and its constituent transcription factors that control nitrogen‐deficiency responses in rice
- (2020) Yoshiaki Ueda et al. NEW PHYTOLOGIST
- OsMFT2 is involved in the regulation of ABA signaling‐mediated seed germination through interacting with OsbZIP23/66/72 in rice
- (2020) Song Song et al. PLANT JOURNAL
- Concurrent activation of OsAMT1;2 and OsGOGAT1 in rice leads to enhanced nitrogen use efficiency under nitrogen limitation
- (2020) Sichul Lee et al. PLANT JOURNAL
- OutPredict: multiple datasets can improve prediction of expression and inference of causality
- (2020) Jacopo Cirrone et al. Scientific Reports
- Comparative Transcriptomics of Rice Genotypes with Contrasting Responses to Nitrogen Stress Reveals Genes Influencing Nitrogen Uptake through the Regulation of Root Architecture
- (2020) Prasanta K. Subudhi et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Enhanced OsNLP4‐OsNiR cascade confers nitrogen use efficiency by promoting tiller number in rice
- (2020) Jun Yu et al. PLANT BIOTECHNOLOGY JOURNAL
- SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress
- (2020) Dengji Lou et al. Rice
- Identification of key genes and modules in response to Cadmium stress in different rice varieties and stem nodes by weighted gene co-expression network analysis
- (2020) Qi Wang et al. Scientific Reports
- The global value of water in agriculture
- (2020) Paolo D’Odorico et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Water impacts nutrient dose responses genome-wide to affect crop production
- (2019) Joseph Swift et al. Nature Communications
- g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)
- (2019) Uku Raudvere et al. NUCLEIC ACIDS RESEARCH
- Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions
- (2019) Matthew D. Brooks et al. Nature Communications
- Enhancement of Iron Acquisition in Rice by the Mugineic Acid Synthase Gene With Ferric Iron Reductase Gene and OsIRO2 Confers Tolerance in Submerged and Nonsubmerged Calcareous Soils
- (2019) Hiroshi Masuda et al. Frontiers in Plant Science
- Genotype-Environment Interaction: Trade-Offs between the Agronomic Performance and Stability of Dual-Purpose Sorghum (Sorghum bicolor L. Moench) Genotypes in Senegal
- (2019) Malick Ndiaye et al. Agronomy-Basel
- OUP accepted manuscript
- (2018) BIOINFORMATICS
- Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants
- (2018) Kranthi Varala et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Overexpression of OsNAC14 Improves Drought Tolerance in Rice
- (2018) Jae Sung Shim et al. Frontiers in Plant Science
- Early molecular events associated with nitrogen deficiency in rice seedling roots
- (2018) Ping-Han Hsieh et al. Scientific Reports
- Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport
- (2018) Feiyun Xu et al. JOURNAL OF EXPERIMENTAL BOTANY
- UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy
- (2017) Tom Smith et al. GENOME RESEARCH
- Nitrogen use efficiency in crops: lessons from Arabidopsis and rice
- (2017) Hua Li et al. JOURNAL OF EXPERIMENTAL BOTANY
- The OsABF1 transcription factor improves drought tolerance by activating the transcription of COR413-TM1 in rice
- (2017) Chunyu Zhang et al. JOURNAL OF EXPERIMENTAL BOTANY
- Overexpression of OsERF48 causes regulation of OsCML16 , a calmodulin-like protein gene that enhances root growth and drought tolerance
- (2017) Harin Jung et al. PLANT BIOTECHNOLOGY JOURNAL
- Co-overexpression of the Constitutively Active Form of OsbZIP46 and ABA-Activated Protein Kinase SAPK6 Improves Drought and Temperature Stress Resistance in Rice
- (2017) Yu Chang et al. Frontiers in Plant Science
- The Arabidopsis thaliana Nuclear Factor Y Transcription Factors
- (2017) Hang Zhao et al. Frontiers in Plant Science
- Genome-Wide Analysis of japonica Rice Performance under Limited Water and Permanent Flooding Conditions
- (2017) Andrea Volante et al. Frontiers in Plant Science
- Identification of early ammonium nitrate-responsive genes in rice roots
- (2017) Hsiu-Chun Yang et al. Scientific Reports
- Trait Combinations That Improve Rice Yield under Drought: Sahbhagi Dhan and New Drought-Tolerant Varieties in South Asia
- (2016) M.S. Anantha et al. CROP SCIENCE
- Interactions between nitrate and ammonium in their uptake, allocation, assimilation, and signaling in plants
- (2016) Takushi Hachiya et al. JOURNAL OF EXPERIMENTAL BOTANY
- PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants
- (2016) Jinpu Jin et al. NUCLEIC ACIDS RESEARCH
- Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes
- (2016) Wei Zong et al. PLANT PHYSIOLOGY
- Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes
- (2016) Avishek Dey et al. PLoS One
- Transcription Factors and Plants Response to Drought Stress: Current Understanding and Future Directions
- (2016) Rohit Joshi et al. Frontiers in Plant Science
- The social costs of nitrogen
- (2016) B. L. Keeler et al. Science Advances
- ABA Regulates Subcellular Redistribution of OsABI-LIKE2, a Negative Regulator in ABA Signaling, to Control Root Architecture and Drought Resistance inOryza sativa
- (2015) Chengxiang Li et al. PLANT AND CELL PHYSIOLOGY
- OsbZIP23 and OsbZIP45, members of the rice basic leucine zipper transcription factor family, are involved in drought tolerance
- (2015) Su-Hyun Park et al. Plant Biotechnology Reports
- A set of GFP-based organelle marker lines combined with DsRed-based gateway vectors for subcellular localization study in rice (Oryza sativa L.)
- (2015) Tsung-Meng Wu et al. PLANT MOLECULAR BIOLOGY
- Cross-Species Network Analysis Uncovers Conserved Nitrogen-Regulated Network Modules in Rice
- (2015) Mariana Obertello et al. PLANT PHYSIOLOGY
- A Calculation Tool for Analyzing Nitrogen Use Efficiency in Annual and Perennial Crops
- (2014) Martin Weih Agronomy-Basel
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Drought inducible OsDhn1 promoter is activated by OsDREB1A and OsDREB1D
- (2013) Sang-Choon Lee et al. JOURNAL OF PLANT BIOLOGY
- TARGET: A Transient Transformation System for Genome-Wide Transcription Factor Target Discovery
- (2013) Bastiaan O.R. Bargmann et al. Molecular Plant
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Genome-wide analysis and expression profiling of half-size ABC protein subgroup G in rice in response to abiotic stress and phytohormone treatments
- (2012) Shuichi Matsuda et al. MOLECULAR GENETICS AND GENOMICS
- Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice
- (2012) Shuxin Zhang et al. PLANT MOLECULAR BIOLOGY
- Phytozome: a comparative platform for green plant genomics
- (2011) David M. Goodstein et al. NUCLEIC ACIDS RESEARCH
- Coexpression Analysis Identifies Rice Starch Regulator1, a Rice AP2/EREBP Family Transcription Factor, as a Novel Rice Starch Biosynthesis Regulator
- (2010) F.-F. Fu et al. PLANT PHYSIOLOGY
- Inferring Regulatory Networks from Expression Data Using Tree-Based Methods
- (2010) Vân Anh Huynh-Thu et al. PLoS One
- The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice
- (2009) Md. Amir Hossain et al. PLANT MOLECULAR BIOLOGY
- VirtualPlant: A Software Platform to Support Systems Biology Research
- (2009) M. S. Katari et al. PLANT PHYSIOLOGY
- Enhanced Abscisic Acid-Mediated Responses in nia1nia2noa1-2 Triple Mutant Impaired in NIA/NR- and AtNOA1-Dependent Nitric Oxide Biosynthesis in Arabidopsis
- (2009) J. Lozano-Juste et al. PLANT PHYSIOLOGY
- WGCNA: an R package for weighted correlation network analysis
- (2008) Peter Langfelder et al. BMC BIOINFORMATICS
- A Novel NAC Transcription Factor, IDEF2, That Recognizes the Iron Deficiency-responsive Element 2 Regulates the Genes Involved in Iron Homeostasis in Plants
- (2008) Yuko Ogo et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Overexpression of OsERF1, a novel rice ERF gene, up-regulates ethylene-responsive genes expression besides affects growth and development in Arabidopsis
- (2008) Yibing Hu et al. JOURNAL OF PLANT PHYSIOLOGY
- Trans-acting factor designated OSBZ8 interacts with both typical abscisic acid responsive elements as well as abscisic acid responsive element-like sequences in the vegetative tissues of indica rice cultivars
- (2008) Aryadeep RoyChoudhury et al. PLANT CELL REPORTS
- The nodule inception-like protein 7 modulates nitrate sensing and metabolism in Arabidopsis
- (2008) Loren Castaings et al. PLANT JOURNAL
- Characterization of OsbZIP23 as a Key Player of the Basic Leucine Zipper Transcription Factor Family for Conferring Abscisic Acid Sensitivity and Salinity and Drought Tolerance in Rice
- (2008) Y. Xiang et al. PLANT PHYSIOLOGY
- Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice
- (2008) Guojun Lu et al. PLANTA
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started