Comparative Transcriptomics of Rice Genotypes with Contrasting Responses to Nitrogen Stress Reveals Genes Influencing Nitrogen Uptake through the Regulation of Root Architecture

Enhanced sustainable green revolution yield via nitrogen-responsive chromatin modulation in rice

(2020) Kun Wu et al.   SCIENCE

Nitrate 2020: Thirty years from transport to signaling networks

(2020) Elena A Vidal et al.   PLANT CELL

Distinct Evolutionary Origins of Intron Retention Splicing Events in NHX1 Antiporter Transcripts Relate to Sequence Specific Distinctions in Oryza Species

(2020) Gothandapani Sellamuthu et al.   Frontiers in Plant Science

OsNAR2.1 Positively Regulates Drought Tolerance and Grain Yield Under Drought Stress Conditions in Rice

(2019) Jingguang Chen et al.   Frontiers in Plant Science

Dissecting molecular mechanisms underlying salt tolerance in rice: a comparative transcriptional profiling of the contrasting genotypes

(2019) Raheleh Mirdar Mansuri et al.   Rice

An Integrated Analysis of the Rice Transcriptome and Metabolome Reveals Differential Regulation of Carbon and Nitrogen Metabolism in Response to Nitrogen Availability

(2019) Wei Xin et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Overexpression of Nitrate Transporter OsNRT2.1 Enhances Nitrate-Dependent Root Elongation

(2019) Naz et al.   Genes

Transcriptomic and Co-Expression Network Profiling of Shoot Apical Meristem Reveal Contrasting Response to Nitrogen Rate between Indica and Japonica Rice Subspecies

(2019) Zhang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Plant Reactome: a knowledgebase and resource for comparative pathway analysis

(2019) Sushma Naithani et al.   NUCLEIC ACIDS RESEARCH

The indica nitrate reductase gene OsNR2 allele enhances rice yield potential and nitrogen use efficiency

(2019) Zhenyu Gao et al.   Nature Communications

A NIGT1-centred transcriptional cascade regulates nitrate signalling and incorporates phosphorus starvation signals in Arabidopsis

(2018) Yoshie Maeda et al.   Nature Communications

Transcriptome Analysis of Two Rice Varieties Contrasting for Nitrogen Use Efficiency under Chronic N Starvation Reveals Differences in Chloroplast and Starch Metabolism-Related Genes

(2018) Subodh Sinha et al.   Genes

Genome-wide discovery of DNA polymorphisms by whole genome sequencing differentiates weedy and cultivated rice

(2018) Chenglin Chai et al.   Scientific Reports

Overexpression of a High-Affinity Nitrate Transporter OsNRT2.1 Increases Yield and Manganese Accumulation in Rice Under Alternating Wet and Dry Condition

(2018) Bingbing Luo et al.   Frontiers in Plant Science

Identification of splice variant of OsGBF1 in Oryza sativa ssp. indica genotypes under salinity stress

(2018) Narasimha Ashwini et al.   3 Biotech

The urea transporter DUR3 contributes to rice production under nitrogen-deficient and field conditions

(2018) Marcel P. Beier et al.   PHYSIOLOGIA PLANTARUM

Nitrate signaling and the control of Arabidopsis growth and development

(2018) Isabel Fredes et al.   CURRENT OPINION IN PLANT BIOLOGY

agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update

(2017) Tian Tian et al.   NUCLEIC ACIDS RESEARCH

Nitrogen pollution knows no bounds

(2017) Edward Boyle   SCIENCE

Nitrate Transport, Sensing, and Responses in Plants

(2016) José A. O'Brien et al.   Molecular Plant

PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants

(2016) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Hormones and nitrate: a two-way connection

(2016) Gabriel Krouk   PLANT MOLECULAR BIOLOGY

Overexpression of Peptide-Encoding OsCEP6.1 Results in Pleiotropic Effects on Growth in Rice (O. sativa)

(2016) Zhipeng Sui et al.   Frontiers in Plant Science

Transcriptome analysis in different rice cultivars provides novel insights into desiccation and salinity stress responses

(2016) Rama Shankar et al.   Scientific Reports

Transcriptome analysis of nitrogen-starvation-responsive genes in rice

(2015) Wenzhu Yang et al.   BMC PLANT BIOLOGY

Nitrogen signaling and use efficiency in plants: what's new?

(2015) Qian Liu et al.   CURRENT OPINION IN PLANT BIOLOGY

Mining for low-nitrogen tolerance genes by integrating meta-analysis and large-scale gene expression data from maize

(2015) Bowen Luo et al.   EUPHYTICA

RNA-Seq analysis of differentially expressed genes in rice under varied nitrogen supplies

(2015) Shun-ying Yang et al.   GENE

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

Variation in NRT1.1B contributes to nitrate-use divergence between rice subspecies

(2015) Bin Hu et al.   NATURE GENETICS

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Root system architecture variation in response to different NH4 + concentrations and its association with nitrogen-deficient tolerance traits in rice

(2014) Satoshi Ogawa et al.   ACTA PHYSIOLOGIAE PLANTARUM

Nitrogen signalling pathways shaping root system architecture: an update

(2014) Brian G Forde   CURRENT OPINION IN PLANT BIOLOGY

Perception of root-derived peptides by shoot LRR-RKs mediates systemic N-demand signaling

(2014) R. Tabata et al.   SCIENCE

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

A Nitrate-Inducible GARP Family Gene Encodes an Auto-Repressible Transcriptional Repressor in Rice

(2013) Naoya Sawaki et al.   PLANT AND CELL PHYSIOLOGY

A stress inducible SUMO conjugating enzyme gene (SaSce9) from a grass halophyte Spartina alterniflora enhances salinity and drought stress tolerance in Arabidopsis

(2012) Ratna Karan et al.   BMC PLANT BIOLOGY

Genetic Architecture of Seed Dormancy in U.S. Weedy Rice in Different Genetic Backgrounds

(2012) Prasanta K. Subudhi et al.   CROP SCIENCE

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

QTL mapping for nitrogen-use efficiency and nitrogen-deficiency tolerance traits in rice

(2012) Dong Wei et al.   PLANT AND SOIL

OsLEA3-2, an Abiotic Stress Induced Gene of Rice Plays a Key Role in Salt and Drought Tolerance

(2012) Jianli Duan et al.   PLoS One

Development of genome-wide SNP assays for rice

(2011) Susan R. McCouch et al.   BREEDING SCIENCE

Rice DUR3 mediates high-affinity urea transport and plays an effective role in improvement of urea acquisition and utilization when expressed in Arabidopsis

(2011) Wei-Hong Wang et al.   NEW PHYTOLOGIST

A Novel Image-Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture

(2011) Guillaume Lobet et al.   PLANT PHYSIOLOGY

Cross-genome map based dissection of a nitrogen use efficiency ortho-metaQTL in bread wheat unravels concerted cereal genome evolution

(2010) Umar Masood Quraishi et al.   PLANT JOURNAL

WRKY transcription factors

(2010) Paul J. Rushton et al.   TRENDS IN PLANT SCIENCE

Nitrogen, sustainable agriculture and food security. A review

(2009) J. H. J. Spiertz   Agronomy for Sustainable Development

Arabidopsis GDSL lipase 2 plays a role in pathogen defense via negative regulation of auxin signaling

(2009) Dong Sook Lee et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Production and characterization of transgenic rice plants carrying a high-affinity nitrate transporter gene (OsNRT2.1)

(2009) Hisato Katayama et al.   BREEDING SCIENCE

Gramene QTL database: development, content and applications

(2009) Junjian Ni et al.   Database-The Journal of Biological Databases and Curation

QTL and QTL × Environment Effects on Agronomic and Nitrogen Acquisition Traits in Rice

(2008) Senapathy Senthilvel et al.   Journal of Integrative Plant Biology

Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice

(2008) Yujie Fang et al.   MOLECULAR GENETICS AND GENOMICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Genetic engineering of improved nitrogen use efficiency in rice by the tissue-specific expression ofalanine aminotransferase

(2008) Ashok K. Shrawat et al.   PLANT BIOTECHNOLOGY JOURNAL

Transformation of the Nitrogen Cycle: Recent Trends, Questions, and Potential Solutions

(2008) J. N. Galloway et al.   SCIENCE

A General Definition and Nomenclature for Alternative Splicing Events

(2008) Michael Sammeth et al.   PLoS Computational Biology