Genomic changes in Kaposi Sarcoma-associated Herpesvirus and their clinical correlates

On the wrong DNA track: Molecular mechanisms of repeat-mediated genome instability

(2020) Alexandra N. Khristich et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

G-quadruplexes may determine the landscape of recombination in HSV-1

(2019) Nandhini Saranathan et al.   BMC GENOMICS

The world-wide incidence of Kaposi's sarcoma in the HIV/AIDS era

(2018) Z Liu et al.   HIV MEDICINE

Recombination rates along the entire Epstein Barr virus genome display a highly heterogeneous landscape

(2018) Berenstein Ariel José et al.   INFECTION GENETICS AND EVOLUTION

OUP accepted manuscript

(2018)   JOURNAL OF INFECTIOUS DISEASES

Polymorphisms in KSHV-encoded microRNA sequences affect levels of mature viral microRNA in Kaposi Sarcoma lesions

(2018) Vickie A. Marshall et al.   Oncotarget

Evolving epidemiology of HIV-associated malignancies

(2017) Meredith S. Shiels et al.   Current Opinion in HIV and AIDS

Reactivation and Lytic Replication of Kaposi’s Sarcoma-Associated Herpesvirus: An Update

(2017) Kawalpreet K. Aneja et al.   Frontiers in Microbiology

Kaposi sarcoma–associated herpesvirus: immunobiology, oncogenesis, and therapy

(2016) Dirk P. Dittmer et al.   JOURNAL OF CLINICAL INVESTIGATION

Epstein-Barr virus strains and variations: Geographic or disease-specific variants?

(2016) Marco Neves et al.   JOURNAL OF MEDICAL VIROLOGY

Translocation and deletion breakpoints in cancer genomes are associated with potential non-B DNA-forming sequences

(2016) Albino Bacolla et al.   NUCLEIC ACIDS RESEARCH

Imatinib for highly chemoresistant Kaposi sarcoma in a patient with long-term HIV control: a case report and literature review

(2015) W. Cao et al.   Current Oncology

Analysis of the ORFK1 hypervariable regions reveal distinct HHV-8 clustering in Kaposi’s sarcoma and non-Kaposi’s cases

(2015) Paola Cordiali-Fei et al.   JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH

Whole-Genome Sequencing of Kaposi's Sarcoma-Associated Herpesvirus from Zambian Kaposi's Sarcoma Biopsy Specimens Reveals Unique Viral Diversity

(2015) Landon N. Olp et al.   JOURNAL OF VIROLOGY

SpeedSeq: ultra-fast personal genome analysis and interpretation

(2015) Colby Chiang et al.   NATURE METHODS

SIST: stress-induced structural transitions in superhelical DNA

(2014) D. Zhabinskaya et al.   BIOINFORMATICS

Impact of alternative DNA structures on DNA damage, DNA repair, and genetic instability

(2014) Guliang Wang et al.   DNA REPAIR

The role of DNA repair in herpesvirus pathogenesis

(2014) Jay C. Brown   GENOMICS

Kaposi's Sarcoma-Associated Herpesvirus K3 and K5 Ubiquitin E3 Ligases Have Stage-Specific Immune Evasion Roles during Lytic Replication

(2014) K. Brulois et al.   JOURNAL OF VIROLOGY

MicroRNA-Mediated Transformation by the Kaposi's Sarcoma-Associated Herpesvirus Kaposin Locus

(2014) Eleonora Forte et al.   JOURNAL OF VIROLOGY

LUMPY: a probabilistic framework for structural variant discovery

(2014) Ryan M Layer et al.   GENOME BIOLOGY

New Onset of Kaposi Sarcoma in a Human Immunodeficiency Virus-1-Infected Homosexual Man, Despite Early Antiretroviral Treatment, Sustained Viral Suppression, and Immune Restoration

(2014) A. von Braun et al.   Open Forum Infectious Diseases

Kaposi Sarcoma

(2013) Oana Radu et al.   ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE

Triplex: an R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in DNA sequences

(2013) Jiří Hon et al.   BIOINFORMATICS

Kaposi's Sarcoma-Associated Herpesvirus MicroRNA Single-Nucleotide Polymorphisms Identified in Clinical Samples Can Affect MicroRNA Processing, Level of Expression, and Silencing Activity

(2013) S.-J. Han et al.   JOURNAL OF VIROLOGY

The Product of Kaposi's Sarcoma-Associated Herpesvirus Immediate Early Gene K4.2 Regulates Immunoglobulin Secretion and Calcium Homeostasis by Interacting with and Inhibiting pERP1

(2013) L.-Y. Wong et al.   JOURNAL OF VIROLOGY

The conundrum of causality in tumor virology: The cases of KSHV and MCV

(2013) Patrick S. Moore et al.   SEMINARS IN CANCER BIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Sequence Analysis of Kaposi Sarcoma–Associated Herpesvirus (KSHV) MicroRNAs in Patients with Multicentric Castleman Disease and KSHV-Associated Inflammatory Cytokine Syndrome

(2012) Alex Ray et al.   JOURNAL OF INFECTIOUS DISEASES

The ephrin receptor tyrosine kinase A2 is a cellular receptor for Kaposi's sarcoma–associated herpesvirus

(2012) Alexander S Hahn et al.   NATURE MEDICINE

Novel monoclonal antibodies for identification of multicentric Castleman's disease; Kaposi's sarcoma-associated herpesvirus-encoded vMIP-I and vMIP-II

(2012) Kazushi Nakano et al.   VIROLOGY

Toward almost closed genomes with GapFiller

(2012) Marten Boetzer et al.   GENOME BIOLOGY

Kaposi's Sarcoma-Associated Herpesvirus Bacterial Artificial Chromosome Contains a Duplication of a Long Unique-Region Fragment within the Terminal Repeat Region

(2011) Y. Yakushko et al.   JOURNAL OF VIROLOGY

What Has the Study of the K3 and K5 Viral Ubiquitin E3 Ligases Taught Us about Ubiquitin-Mediated Receptor Regulation?

(2011) Jessica M. Boname et al.   Viruses-Basel

Monofunctional and Polyfunctional CD8+ T Cell Responses to Human Herpesvirus 8 Lytic and Latency Proteins

(2010) L. Lepone et al.   Clinical and Vaccine Immunology

Herpesviruses and Chromosomal Integration

(2010) G. Morissette et al.   JOURNAL OF VIROLOGY

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