Long-term N-addition alters the community structure of functionally important N-cycling soil microorganisms across global grasslands

Global Grassland Diazotrophic Communities Are Structured by Combined Abiotic, Biotic, and Spatial Distance Factors but Resilient to Fertilization

(2022) Maximilian Nepel et al.   Frontiers in Microbiology

Altitudinal niches of symbiotic, associative and free-living diazotrophs driven by soil moisture and temperature in the alpine meadow on the Tibetan Plateau

(2022) Junpeng Rui et al.   ENVIRONMENTAL RESEARCH

Nitrogen but not phosphorus addition affects symbiotic N2 fixation by legumes in natural and semi-natural grasslands located on four continents

(2022) Eduardo Vázquez et al.   PLANT AND SOIL

Nitrogen has a greater influence than phosphorus on the diazotrophic community in two successive crop seasons in Northeast China

(2021) Jing Zhou et al.   Scientific Reports

Deep Soil Layers of Drought-Exposed Forests Harbor Poorly Known Bacterial and Fungal Communities

(2021) Beat Frey et al.   Frontiers in Microbiology

Nitrogen and phosphorus fertilization consistently favor pathogenic over mutualistic fungi in grassland soils

(2021) Ylva Lekberg et al.   Nature Communications

Organic manure rather than phosphorus fertilization primarily determined asymbiotic nitrogen fixation rate and the stability of diazotrophic community in an upland red soil

(2021) Wei Shi et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Global impacts of fertilization and herbivore removal on soil net nitrogen mineralization are modulated by local climate and soil properties

(2020) Anita C. Risch et al.   GLOBAL CHANGE BIOLOGY

Liming reduces N2O emissions from Mediterranean soil after-rewetting and affects the size, structure and transcription of microbial communities

(2020) Eduardo Vázquez et al.   SOIL BIOLOGY & BIOCHEMISTRY

Blind spots in global soil biodiversity and ecosystem function research

(2020) Carlos A. Guerra et al.   Nature Communications

Responses of soil ammonia-oxidizing bacteria and archaea to short-term warming and nitrogen input in a semi-arid grassland on the Loess Plateau

(2020) Fuwei Wang et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Nitrogen deposition increases global grassland N2O emission rates steeply: A meta-analysis

(2020) Yangong Du et al.   CATENA

Nitrogen use efficiency and nitrous oxide emissions from five UK fertilised grasslands

(2019) L.M. Cardenas et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Experimental warming alters the community composition, diversity, and N 2 fixation activity of peat moss ( Sphagnum fallax ) microbiomes

(2019) Alyssa A. Carrell et al.   GLOBAL CHANGE BIOLOGY

Plant-driven niche differentiation of ammonia-oxidizing bacteria and archaea in global drylands

(2019) Chanda Trivedi et al.   ISME Journal

Soil net nitrogen mineralisation across global grasslands

(2019) A. C. Risch et al.   Nature Communications

Suppressed N fixation and diazotrophs after four decades of fertilization

(2019) Kunkun Fan et al.   Microbiome

Ammonia‐Oxidizing Bacteria and Archaea: Response to Simulated Climate Warming and Nitrogen Supplementation

(2019) Guogang Zhang et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

N-fertilizer-driven association between the arbuscular mycorrhizal fungal community and diazotrophic community impacts wheat yield

(2018) Chen Zhu et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Autotrophic and symbiotic diazotrophs dominate nitrogen-fixing communities in Tibetan grassland soils

(2018) Rongxiao Che et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Vertical distribution of ammonia-oxidizing microorganisms across a soil profile of the Chinese Loess Plateau and their responses to nitrogen inputs

(2018) Jinjin Tao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes

(2018) Ricardo J. Eloy Alves et al.   Nature Communications

Ammonia-Oxidizing Archaea Show More Distinct Biogeographic Distribution Patterns than Ammonia-Oxidizing Bacteria across the Black Soil Zone of Northeast China

(2018) Junjie Liu et al.   Frontiers in Microbiology

Long-term fertilization influences community assembly processes of soil diazotrophs

(2018) Maomao Feng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Ammonia-oxidizing archaea and bacteria responding differently to fertilizer type and irrigation frequency as revealed by Illumina Miseq sequencing

(2017) Ya-Dong Yang et al.   JOURNAL OF SOILS AND SEDIMENTS

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Soil pH is a major driver of soil diazotrophic community assembly in Qinghai-Tibet alpine meadows

(2017) Yansu Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Spatial and temporal dynamics of nitrogen fixing, nitrifying and denitrifying microbes in an unfertilized grassland soil

(2017) Kathleen Regan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Contrasting effects of nitrogen forms and soil pH on ammonia oxidizing microorganisms and their responses to long-term nitrogen fertilization in a typical steppe ecosystem

(2017) Jiaoyan Ying et al.   SOIL BIOLOGY & BIOCHEMISTRY

Ammonia-oxidizing bacteria rather than archaea respond to short-term urea amendment in an alpine grassland

(2017) Xingjia Xiang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Impact of 25 years of inorganic fertilization on diazotrophic abundance and community structure in an acidic soil in southern China

(2017) Chao Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Archaea produce lower yields of N2 O than bacteria during aerobic ammonia oxidation in soil

(2016) Linda Hink et al.   ENVIRONMENTAL MICROBIOLOGY

Inhibition of nitrification to mitigate nitrate leaching and nitrous oxide emissions in grazed grassland: a review

(2016) Hong Jie Di et al.   JOURNAL OF SOILS AND SEDIMENTS

Biogeographic patterns of soil diazotrophic communities across six forests in the North America

(2016) Qichao Tu et al.   MOLECULAR ECOLOGY

Meta-analysis reveals ammonia-oxidizing bacteria respond more strongly to nitrogen addition than ammonia-oxidizing archaea

(2016) Chelsea J. Carey et al.   SOIL BIOLOGY & BIOCHEMISTRY

NifH-Harboring Bacterial Community Composition across an Alaskan Permafrost Thaw Gradient

(2016) C. Ryan Penton et al.   Frontiers in Microbiology

A global analysis of soil acidification caused by nitrogen addition

(2015) Dashuan Tian et al.   Environmental Research Letters

Effects of nitrogen deposition rates and frequencies on the abundance of soil nitrogen-related functional genes in temperate grassland of northern China

(2015) Qiushi Ning et al.   JOURNAL OF SOILS AND SEDIMENTS

Complete nitrification by Nitrospira bacteria

(2015) Holger Daims et al.   NATURE

Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe

(2015) Jonathan W. Leff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Archaeal Ammonia Oxidizers Dominate in Numbers, but Bacteria Drive Gross Nitrification in N-amended Grassland Soil

(2015) Anna E. Sterngren et al.   Frontiers in Microbiology

Ammonia-oxidising bacteria not archaea dominate nitrification activity in semi-arid agricultural soil

(2015) Natasha C. Banning et al.   Scientific Reports

Plant diversity predicts beta but not alpha diversity of soil microbes across grasslands worldwide

(2014) Suzanne M. Prober et al.   ECOLOGY LETTERS

nifHpyrosequencing reveals the potential for location-specific soil chemistry to influence N2-fixing community dynamics

(2014) Mónica M. Collavino et al.   ENVIRONMENTAL MICROBIOLOGY

Nitrification and acidification from urea application in red soil (Ferralic Cambisol) after different long-term fertilization treatments

(2014) Zejiang Cai et al.   JOURNAL OF SOILS AND SEDIMENTS

Microbial functional genes involved in nitrogen fixation, nitrification and denitrification in forest ecosystems

(2014) David J. Levy-Booth et al.   SOIL BIOLOGY & BIOCHEMISTRY

Responses of ammonia-oxidizing bacteria and archaea to nitrogen fertilization and precipitation increment in a typical temperate steppe in Inner Mongolia

(2013) Yongliang Chen et al.   APPLIED SOIL ECOLOGY

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Abundance and community structure of ammonia-oxidizing bacteria and archaea in purple soil under long-term fertilization

(2013) Zhifeng Zhou et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Nitrification rates in Arctic soils are associated with functionally distinct populations of ammonia-oxidizing archaea

(2013) Ricardo J Eloy Alves et al.   ISME Journal

Diazotroph community structure and abundance in wheat–fallow and wheat–pea crop rotations

(2013) C.L. Reardon et al.   SOIL BIOLOGY & BIOCHEMISTRY

Finding generality in ecology: a model for globally distributed experiments

(2013) Elizabeth T. Borer et al.   Methods in Ecology and Evolution

Diversity, Physiology, and Niche Differentiation of Ammonia-Oxidizing Archaea

(2012) Roland Hatzenpichler   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Collinearity: a review of methods to deal with it and a simulation study evaluating their performance

(2012) Carsten F. Dormann et al.   ECOGRAPHY

A Comprehensive Evaluation of PCR Primers to Amplify the nifH Gene of Nitrogenase

(2012) John Christian Gaby et al.   PLoS One

Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation

(2012) James I. Prosser et al.   TRENDS IN MICROBIOLOGY

Functional Ecology of Free-Living Nitrogen Fixation: A Contemporary Perspective

(2011) Sasha C. Reed et al.   Annual Review of Ecology Evolution and Systematics

Heavy-Machinery Traffic Impacts Methane Emissions as Well as Methanogen Abundance and Community Structure in Oxic Forest Soils

(2011) Beat Frey et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Nitrous Oxide Emission from Grazed Grassland Under Different Management Systems

(2011) Rashad Rafique et al.   ECOSYSTEMS

amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions

(2011) Michael Pester et al.   ENVIRONMENTAL MICROBIOLOGY

A global census of nitrogenase diversity

(2011) John Christian Gaby et al.   ENVIRONMENTAL MICROBIOLOGY

Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms

(2011) Daniel T Verhamme et al.   ISME Journal

Niche specialization of terrestrial archaeal ammonia oxidizers

(2011) C. Gubry-Rangin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

(2009) Willm Martens-Habbena et al.   NATURE

Nitrification driven by bacteria and not archaea in nitrogen-rich grassland soils

(2009) H. J. Di et al.   Nature Geoscience

NITROGEN LIMITATION OF NET PRIMARY PRODUCTIVITY IN TERRESTRIAL ECOSYSTEMS IS GLOBALLY DISTRIBUTED

(2008) David S. LeBauer et al.   ECOLOGY

The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria

(2008) Graeme W. Nicol et al.   ENVIRONMENTAL MICROBIOLOGY

Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms

(2008) Maria Tourna et al.   ENVIRONMENTAL MICROBIOLOGY

Impact of past and present land-management on the C-balance of a grassland in the Swiss Alps

(2008) NELE ROGIERS et al.   GLOBAL CHANGE BIOLOGY

Evidence for the functional significance of diazotroph community structure in soil

(2008) Shi-Fang Hsu et al.   ISME Journal