MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters

The LOTUS initiative for open knowledge management in natural products research

(2022) Adriano Rutz et al.   eLife

Compendium of specialized metabolite biosynthetic diversity encoded in bacterial genomes

(2022) Athina Gavriilidou et al.   Nature Microbiology

Biosynthetic potential of the global ocean microbiome

(2022) Lucas Paoli et al.   NATURE

PIKAChU: a Python-based informatics kit for analysing chemical units

(2022) Barbara R. Terlouw et al.   Journal of Cheminformatics

antiSMASH 6.0: improving cluster detection and comparison capabilities

(2021) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

Structures of a non-ribosomal peptide synthetase condensation domain suggest the basis of substrate selectivity

(2021) Thierry Izoré et al.   Nature Communications

A Machine Learning Bioinformatics Method to Predict Biological Activity from Biosynthetic Gene Clusters

(2021) Allison S. Walker et al.   Journal of Chemical Information and Modeling

The Natural Products Atlas 2.0: a database of microbially-derived natural products

(2021) Jeffrey A van Santen et al.   NUCLEIC ACIDS RESEARCH

Comprehensive prediction of secondary metabolite structure and biological activity from microbial genome sequences

(2020) Michael A. Skinnider et al.   Nature Communications

A deep learning genome-mining strategy for biosynthetic gene cluster prediction

(2019) Geoffrey D Hannigan et al.   NUCLEIC ACIDS RESEARCH

RiPPMiner: a bioinformatics resource for deciphering chemical structures of RiPPs based on prediction of cleavage and cross-links

(2017) Priyesh Agrawal et al.   NUCLEIC ACIDS RESEARCH

plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters

(2017) Satria A. Kautsar et al.   NUCLEIC ACIDS RESEARCH

The ChEMBL database in 2017

(2016) Anna Gaulton et al.   NUCLEIC ACIDS RESEARCH

Editorial: ChemSpider – a tool for Natural Products research

(2015)   NATURAL PRODUCT REPORTS

Minimum Information about a Biosynthetic Gene cluster

(2015) Marnix H Medema et al.   Nature Chemical Biology

NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity

(2011) Marc Röttig et al.   NUCLEIC ACIDS RESEARCH

Extended-Connectivity Fingerprints

(2010) David Rogers et al.   Journal of Chemical Information and Modeling