YEASTRACT+: a portal for the exploitation of global transcription regulation and metabolic model data in yeast biotechnology and pathogenesis

Exploring Yeast Diversity to Produce Lipid-Based Biofuels from Agro-Forestry and Industrial Organic Residues

(2022) Marta Mota et al.   Journal of Fungi

Transcriptome-wide differences between Saccharomyces cerevisiae and Saccharomyces cerevisiae var. boulardii: Clues on host survival and probiotic activity based on promoter sequence variability

(2021) Pedro Pais et al.   GENOMICS

From a genome assembly to full regulatory network prediction: the case study of Rhodotorula toruloides putative Haa1-regulon

(2021) Jorge Oliveira et al.   BMC BIOINFORMATICS

Fission stories: using PomBase to understand Schizosaccharomyces pombe biology

(2021) Midori A Harris et al.   GENETICS

Candida auris: From Multidrug Resistance to Pan-Resistant Strains

(2020) Muluneh Worku et al.   Infection and Drug Resistance

Genome-Scale Metabolic Model of the Human Pathogen Candida albicans: A Promising Platform for Drug Target Prediction

(2020) Romeu Viana et al.   Journal of Fungi

YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts

(2019) Pedro T Monteiro et al.   NUCLEIC ACIDS RESEARCH

A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

(2019) Hongzhong Lu et al.   Nature Communications

Genome scale metabolic models as tools for drug design and personalized medicine

(2018) Vytautas Raškevičius et al.   PLoS One

Adaptive Response and Tolerance to Acetic Acid in Saccharomyces cerevisiae and Zygosaccharomyces bailii: A Physiological Genomics Perspective

(2018) Margarida Palma et al.   Frontiers in Microbiology

Engineering Kluyveromyces marxianus as a Robust Synthetic Biology Platform Host

(2018) Paul Cernak et al.   mBio

YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae

(2017) Miguel C Teixeira et al.   NUCLEIC ACIDS RESEARCH

Kluyveromyces lactis: An emerging tool in biotechnology

(2016) Sebastian C. Spohner et al.   JOURNAL OF BIOTECHNOLOGY

The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts

(2016) Pedro Tiago Monteiro et al.   NUCLEIC ACIDS RESEARCH

TheCandidaGenome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data

(2016) Marek S. Skrzypek et al.   NUCLEIC ACIDS RESEARCH

Applications of Genome-Scale Metabolic Models in Biotechnology and Systems Medicine

(2016) Cheng Zhang et al.   Frontiers in Physiology

Global trends in the distribution of Candida species causing candidemia

(2014) J. Guinea   CLINICAL MICROBIOLOGY AND INFECTION

The Reference Genome Sequence of Saccharomyces cerevisiae : Then and Now

(2014) Stacia R. Engel et al.   G3-Genes Genomes Genetics

COBRApy: COnstraints-Based Reconstruction and Analysis for Python

(2013) Ali Ebrahim et al.   BMC Systems Biology

The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation inSaccharomyces cerevisiae

(2013) Miguel Cacho Teixeira et al.   NUCLEIC ACIDS RESEARCH

Optimization Approaches for the In Silico Discovery of Optimal Targets for Gene Over/Underexpression

(2012) Emanuel Gonçalves et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface

(2010) D. Abdulrehman et al.   NUCLEIC ACIDS RESEARCH

AmiGO: online access to ontology and annotation data

(2008) Seth Carbon et al.   BIOINFORMATICS