From a genome assembly to full regulatory network prediction: the case study of Rhodotorula toruloides putative Haa1-regulon

Transcriptome-wide differences between Saccharomyces cerevisiae and Saccharomyces cerevisiae var. boulardii: Clues on host survival and probiotic activity based on promoter sequence variability

(2021) Pedro Pais et al.   GENOMICS

Complete Utilization of the Major Carbon Sources Present in Sugar Beet Pulp Hydrolysates by the Oleaginous Red Yeasts Rhodotorula toruloides and R. mucilaginosa

(2021) Luís C. Martins et al.   Journal of Fungi

Valorisation of pectin-rich agro-industrial residues by yeasts: potential and challenges

(2020) Luís C. Martins et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts

(2019) Pedro T Monteiro et al.   NUCLEIC ACIDS RESEARCH

Genomewide and Enzymatic Analysis Reveals Efficient D-Galacturonic Acid Metabolism in the Basidiomycete Yeast Rhodosporidium toruloides

(2019) Ryan J. Protzko et al.   mSystems

The Engineering Potential of Rhodosporidium toruloides as a Workhorse for Biotechnological Applications

(2018) Young-Kyoung Park et al.   TRENDS IN BIOTECHNOLOGY

Transcriptional profiling of Zygosaccharomyces bailii early response to acetic acid or copper stress mediated by ZbHaa1

(2018) Miguel Antunes et al.   Scientific Reports

Molecular and physiological basis of Saccharomyces cerevisiae tolerance to adverse lignocellulose-based process conditions

(2018) Joana T. Cunha et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The Gene Ontology Resource: 20 years and still GOing strong

(2018)   NUCLEIC ACIDS RESEARCH

Activation of Haa1 and War1 transcription factors by differential binding of weak acid anions in Saccharomyces cerevisiae

(2018) Myung Sup Kim et al.   NUCLEIC ACIDS RESEARCH

Improvement of yeast tolerance to acetic acid through Haa1 transcription factor engineering: towards the underlying mechanisms

(2017) Steve Swinnen et al.   Microbial Cell Factories

Membrane Phosphoproteomics of Yeast Early Response to Acetic Acid: Role of Hrk1 Kinase and Lipid Biosynthetic Pathways, in Particular Sphingolipids

(2017) Joana F. Guerreiro et al.   Frontiers in Microbiology

TheCandidaGenome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data

(2016) Marek S. Skrzypek et al.   NUCLEIC ACIDS RESEARCH

The CgHaa1-Regulon Mediates Response and Tolerance to Acetic Acid Stress in the Human Pathogen Candida glabrata

(2016) Ruben T. Bernardo et al.   G3-Genes Genomes Genetics

Plasma membrane proteins Yro2 and Mrh1 are required for acetic acid tolerance in Saccharomyces cerevisiae

(2014) Akiko Takabatake et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A multi-omic map of the lipid-producing yeast Rhodosporidium toruloides

(2012) Zhiwei Zhu et al.   Nature Communications

Oil production by oleaginous yeasts using the hydrolysate from pretreatment of wheat straw with dilute sulfuric acid

(2011) Xiaochen Yu et al.   BIORESOURCE TECHNOLOGY

Identification of a DNA-binding site for the transcription factor Haa1, required for Saccharomyces cerevisiae response to acetic acid stress

(2011) Nuno P. Mira et al.   NUCLEIC ACIDS RESEARCH

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

An extended IUPAC nomenclature code for polymorphic nucleic acids

(2010) Andrew D. Johnson   BIOINFORMATICS

Genome-wide identification of Saccharomyces cerevisiae genes required for tolerance to acetic acid

(2010) Nuno P Mira et al.   Microbial Cell Factories

Genomic Expression Program Involving the Haa1p-Regulon in Saccharomyces cerevisiae Response to Acetic Acid

(2010) Nuno P. Mira et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Effects of biomass hydrolysis by-products on oleaginous yeast Rhodosporidium toruloides

(2009) Cuimin Hu et al.   BIORESOURCE TECHNOLOGY