SARS-CoV-2 infection and persistence in the human body and brain at autopsy

Innate immunity: the first line of defense against SARS-CoV-2

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Single-cell RNA sequencing reveals SARS-CoV-2 infection dynamics in lungs of African green monkeys

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Duration and key determinants of infectious virus shedding in hospitalized patients with coronavirus disease-2019 (COVID-19)

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Evidence of Severe Acute Respiratory Syndrome Coronavirus 2 Replication and Tropism in the Lungs, Airways, and Vascular Endothelium of Patients With Fatal Coronavirus Disease 2019: An Autopsy Case Series

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SARS-CoV-2 within-host diversity and transmission

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SARS-CoV-2 Total and Subgenomic RNA Viral Load in Hospitalized Patients

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High-dimensional characterization of post-acute sequelae of COVID-19

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SARS-CoV-2 infection of the oral cavity and saliva

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Temporal dynamics of SARS-CoV-2 mutation accumulation within and across infected hosts

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High-throughput, single-copy sequencing reveals SARS-CoV-2 spike variants coincident with mounting humoral immunity during acute COVID-19

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A cohort autopsy study defines COVID-19 systemic pathogenesis

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Can Testing Predict SARS-CoV-2 Infectivity? The Potential for Certain Methods to be a Surrogate for Replication-Competent Virus

(2021) Matthew J. Binnicker   JOURNAL OF CLINICAL MICROBIOLOGY

Mechanisms of Antiviral Immune Evasion of SARS-CoV-2

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Pathophysiology of infection with SARS‐CoV ‐2— What is known and what remains a mystery

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Heterogeneity of meningeal B cells reveals a lymphopoietic niche at the CNS borders

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Long covid—mechanisms, risk factors, and management

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Patterns of within-host genetic diversity in SARS-CoV-2

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Early developing B cells undergo negative selection by central nervous system-specific antigens in the meninges

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Evidence of SARS-CoV-2-Specific T-Cell-Mediated Myocarditis in a MIS-A Case

(2021) Kevin M. Vannella et al.   Frontiers in Immunology

Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR

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Detection of Nucleocapsid Antibody to SARS-CoV-2 is More Sensitive than Antibody to Spike Protein in COVID-19 Patients

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Angiotensin‐converting enzyme‐2 ( ACE2 ), SARS‐CoV ‐2 and pathophysiology of coronavirus disease 2019 ( COVID ‐19)

(2020) Arno R. Bourgonje et al.   JOURNAL OF PATHOLOGY

Virological assessment of hospitalized patients with COVID-2019

(2020) Roman Wölfel et al.   NATURE

Respiratory disease in rhesus macaques inoculated with SARS-CoV-2

(2020) Vincent J. Munster et al.   NATURE

Multiorgan and Renal Tropism of SARS-CoV-2

(2020) Victor G. Puelles et al.   NEW ENGLAND JOURNAL OF MEDICINE

Enhanced isolation of SARS-CoV-2 by TMPRSS2-expressing cells

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Detection of SARS-CoV-2 by RNAscope®in situ hybridization and immunohistochemistry techniques

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Clinical benefit of remdesivir in rhesus macaques infected with SARS-CoV-2

(2020) Brandi N. Williamson et al.   NATURE

Hydroxychloroquine prophylaxis and treatment is ineffective in macaque and hamster SARS-CoV-2 disease models

(2020) Kyle Rosenke et al.   JCI Insight

Tissue-Specific Immunopathology in Fatal COVID-19

(2020) David A. Dorward et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

What can we learn from brain autopsies in COVID-19?

(2020) Shibani S. Mukerji et al.   NEUROSCIENCE LETTERS

Temporal and spatial heterogeneity of host response to SARS-CoV-2 pulmonary infection

(2020) Niyati Desai et al.   Nature Communications

SARS-CoV-2 genomic and subgenomic RNAs in diagnostic samples are not an indicator of active replication

(2020) Soren Alexandersen et al.   Nature Communications

Body Localization of ACE-2: On the Trail of the Keyhole of SARS-CoV-2

(2020) Francesca Salamanna et al.   Frontiers in Medicine

Fast gapped-read alignment with Bowtie 2

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