Single-cell RNA sequencing reveals SARS-CoV-2 infection dynamics in lungs of African green monkeys

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Stability of RNA sequences derived from the coronavirus genome in human cells

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Single cell RNA sequencing of 13 human tissues identify cell types and receptors of human coronaviruses

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The Architecture of SARS-CoV-2 Transcriptome

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Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients

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Predicting infectious SARS-CoV-2 from diagnostic samples

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Post‐mortem examination of COVID19 patients reveals diffuse alveolar damage with severe capillary congestion and variegated findings of lungs and other organs suggesting vascular dysfunction

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Pathological study of the 2019 novel coronavirus disease (COVID-19) through postmortem core biopsies

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Virological assessment of hospitalized patients with COVID-2019

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Respiratory disease in rhesus macaques inoculated with SARS-CoV-2

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Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19

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SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes

(2020) Waradon Sungnak et al.   NATURE MEDICINE

Comparative pathogenesis of COVID-19, MERS, and SARS in a nonhuman primate model

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Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing

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Culture-Based Virus Isolation To Evaluate Potential Infectivity of Clinical Specimens Tested for COVID-19

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Longitudinal analyses reveal immunological misfiring in severe COVID-19

(2020) Carolina Lucas et al.   NATURE

COVID-19 severity correlates with airway epithelium–immune cell interactions identified by single-cell analysis

(2020) Robert Lorenz Chua et al.   NATURE BIOTECHNOLOGY

A single-cell atlas of the peripheral immune response in patients with severe COVID-19

(2020) Aaron J. Wilk et al.   NATURE MEDICINE

Alveolar macrophage dysfunction and cytokine storm in the pathogenesis of two severe COVID-19 patients

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SARS-CoV-2 infection of African green monkeys results in mild respiratory disease discernible by PET/CT imaging and shedding of infectious virus from both respiratory and gastrointestinal tracts

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Establishment of an African green monkey model for COVID-19 and protection against re-infection

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Gamma Irradiation as an Effective Method for Inactivation of Emerging Viral Pathogens

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Comprehensive Integration of Single-Cell Data

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IFN-I response timing relative to virus replication determines MERS coronavirus infection outcomes

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An Intranasal Exposure Model of Lethal Nipah Virus Infection in African Green Monkeys

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Mapping the Mouse Cell Atlas by Microwell-Seq

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Lung macrophage scavenger receptor SR-A6 (MARCO) is an adenovirus type-specific virus entry receptor

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Mini viral RNAs act as innate immune agonists during influenza virus infection

(2018) Aartjan J. W. te Velthuis et al.   Nature Microbiology

Phagocytosis imprints heterogeneity in tissue-resident macrophages

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Macrophage phagocytosis cracking the defect code in COPD

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Dysregulated Type I Interferon and Inflammatory Monocyte-Macrophage Responses Cause Lethal Pneumonia in SARS-CoV-Infected Mice

(2016) Rudragouda Channappanavar et al.   Cell Host & Microbe

Detailed Analysis of the African Green Monkey Model of Nipah Virus Disease

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Antibody-dependent infection of human macrophages by severe acute respiratory syndrome coronavirus

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A Systems Analysis Identifies a Feedforward Inflammatory Circuit Leading to Lethal Influenza Infection

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Middle East respiratory syndrome coronavirus (MERS-CoV) causes transient lower respiratory tract infection in rhesus macaques

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Histo-Cytometry: A Method for Highly Multiplex Quantitative Tissue Imaging Analysis Applied to Dendritic Cell Subset Microanatomy in Lymph Nodes

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Integrative genomics viewer

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