THP9 enhances seed protein content and nitrogen-use efficiency in maize

From use efficiency to effective use of nitrogen: A dilemma for maize breeding improvement

(2022) Ignacio A. Ciampitti et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Improving Crop Nitrogen Use Efficiency Toward Sustainable Green Revolution

(2022) Qian Liu et al.   Annual Review of Plant Biology

Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm

(2021) Haoyu Cheng et al.   NATURE METHODS

Wheat with greatly reduced accumulation of free asparagine in the grain, produced by CRISPR/Cas9 editing of asparagine synthetase gene TaASN2

(2021) Sarah Raffan et al.   PLANT BIOTECHNOLOGY JOURNAL

Targeting Nitrogen Metabolism and Transport Processes to Improve Plant Nitrogen Use Efficiency

(2021) Samantha Vivia The et al.   Frontiers in Plant Science

Molecular Regulatory Networks for Improving Nitrogen Use Efficiency in Rice

(2021) Mengmeng Hou et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes

(2021) Matthew B. Hufford et al.   SCIENCE

Nitrogen Use Efficiency Definitions of Today and Tomorrow

(2021) Kate A. Congreves et al.   Frontiers in Plant Science

Nitrogen assimilation in plants: current status and future prospects

(2021) Xiujie Liu et al.   Journal of Genetics and Genomics

Nitrogen use efficiency (NUE): elucidated mechanisms, mapped genes and gene networks in maize (Zea mays L.)

(2021) Shabir H. Wani et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Mining maize diversity and improving its nutritional aspects within agro‐food systems

(2020) Natalia Palacios‐Rojas et al.   COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY

OsASN1 overexpression in rice increases grain protein content and yield under nitrogen-limiting conditions

(2020) Sichul Lee et al.   PLANT AND CELL PHYSIOLOGY

Cereal asparagine synthetase genes

(2020) Sarah Raffan et al.   ANNALS OF APPLIED BIOLOGY

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

OUP accepted manuscript

(2018)   BIOINFORMATICS

Three cytosolic glutamine synthetase isoforms localized in different-order veins act together for N remobilization and seed filling in Arabidopsis

(2018) Michael Moison et al.   JOURNAL OF EXPERIMENTAL BOTANY

Biochemical and genetic analyses of N metabolism in maize testcross seedlings: 2. Roots

(2018) Ignacio Trucillo Silva et al.   THEORETICAL AND APPLIED GENETICS

QTLseqr: An R Package for Bulk Segregant Analysis with Next-Generation Sequencing

(2018) Ben N. Mansfeld et al.   Plant Genome

Analysis of Gene Regulatory Networks of Maize in Response to Nitrogen

(2018) Lu Jiang et al.   Genes

Construction of a network describing asparagine metabolism in plants and its application to the identification of genes affecting asparagine metabolism in wheat under drought and nutritional stress

(2018) Tanya Y. Curtis et al.   Food and Energy Security

OsASN1 Plays a Critical Role in Asparagine-Dependent Rice Development

(2018) Le Luo et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

De novo assembly of haplotype-resolved genomes with trio binning

(2018) Sergey Koren et al.   NATURE BIOTECHNOLOGY

ASN1 -encoded asparagine synthetase in floral organs contributes to nitrogen filling in Arabidopsis seeds

(2017) Laure Gaufichon et al.   PLANT JOURNAL

Comparative metabolome analysis of wheat embryo and endosperm reveals the dynamic changes of metabolites during seed germination

(2017) Caixia Han et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genetic Analysis of Teosinte Alleles for Kernel Composition Traits in Maize

(2017) Avinash Karn et al.   G3-Genes Genomes Genetics

Construction of the third-generation Zea mays haplotype map

(2017) Robert Bukowski et al.   GigaScience

Analysis of tandem gene copies in maize chromosomal regions reconstructed from long sequence reads

(2016) Jiaqiang Dong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

(2016) Neva C. Durand et al.   Cell Systems

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom

(2016) Neva C. Durand et al.   Cell Systems

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

The identification of new cytosolic glutamine synthetase and asparagine synthetase genes in barley (Hordeum vulgare L.), and their expression during leaf senescence

(2015) Liliana Avila-Ospina et al.   JOURNAL OF EXPERIMENTAL BOTANY

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Asparagine Synthetase1, but not Asparagine Synthetase2, is Responsible for the Biosynthesis of Asparagine Following the Supply of Ammonium to Rice Roots

(2015) Miwa Ohashi et al.   PLANT AND CELL PHYSIOLOGY

Transcriptional Regulation of Zein Gene Expression in Maize through the Additive and Synergistic Action of opaque2, Prolamine-Box Binding Factor, and O2 Heterodimerizing Proteins

(2015) Zhiyong Zhang et al.   PLANT CELL

Genome-Wide Association of Carbon and Nitrogen Metabolism in the Maize Nested Association Mapping Population

(2015) Nengyi Zhang et al.   PLANT PHYSIOLOGY

Dynamic Transcriptome Landscape of Maize Embryo and Endosperm Development

(2014) Jian Chen et al.   PLANT PHYSIOLOGY

Proteins from land plants – Potential resources for human nutrition and food security

(2013) Li Day   TRENDS IN FOOD SCIENCE & TECHNOLOGY

Genome-wide efficient mixed-model analysis for association studies

(2012) Xiang Zhou et al.   NATURE GENETICS

Arabidopsis thaliana ASN2encoding asparagine synthetase is involved in the control of nitrogen assimilation and export during vegetative growth

(2012) LAURE GAUFICHON et al.   PLANT CELL AND ENVIRONMENT

Diversity of Chromosomal Karyotypes in Maize and Its Relatives

(2010) P.S. Albert et al.   CYTOGENETIC AND GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Identification and characterization of four distinct asparagine synthetase (AsnS) genes in maize (Zea mays L.)

(2008) James Todd et al.   PLANT SCIENCE